@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-10 )
AIPCGQVNSALASCVSYAKGSGASPPGACCSGVRRLAGLARSTADKQAACRCIKSAAGGLNPGKAASIPSKCGVSIPYSISASVDCSKIH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------.........10........----20----..-------------------.-----.-----.-----...---30........40-----------........50.-----...--------.--.------.--------------.60-----------------------.-------------.......--.70..------....--------------..80........90-------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------AIPCGQVNSALASCVSYAK----GS----GA-------------------S-----P-----P-----GAC---CSGVRRLAGLAR-----------STADKQAACRC-----IKS--------A--A------G--------------GL------------------------N-------------PGKAASI--PSKCG------VSIP--------------YSISASVDCSKIH--------------------------------------------------------------------------------------------------------------------------------------
11
SP3
97.72
65%
-110
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------
A
I
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G
Q
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A
S
A
I
A
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C
I
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Y
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----
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----
G
S
-------------------
G
-----
P
-----
S
-----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
-----
L
K
N
--------
A
--
A
------
A
G
VS-----------
G
L
------------------------
N
-------------
A
G
N
A
A
S
I
--
P
S
K
C
G
------
V
S
I
P
--------------
Y
T
I
S
T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
94.46
59%
-122
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
N
L
A
P
C
L
A
Y
L
R
----
N
T
----
G
--------------------------
P
-----
L
-----
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
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I
A
C
T
C
-----
L
K
S
--------
A
--
A
G
A
I---
S
--------------
G
I
------------------------
N
-------------
L
G
K
A
A
G
L
--
P
S
T
C
G
------
V
N
I
P
--------------
Y
K
I
S
P
S
T
D
C
S
K
V
Q
--------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
94.16
66%
-109
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
I
A
P
C
I
S
Y
A
R
----
G
Q
----
G
S
-------------------
G
-----
P
-----
S
-----
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
-----
L
K
N
--------
A
--
A
------
A
G
VS-----------
G
L
------------------------
N
-------------
A
G
N
A
A
S
I
--
P
S
K
C
G
------
V
S
I
P
--------------
Y
T
I
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T
S
T
D
C
S
R
V
N
--------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
88.55
49%
-122
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
L
V
R
P
C
L
S
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----
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-----
P
-------------------
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-----
P
-----
S
-----
G
Q
C
---
C
D
G
V
K
N
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H
N
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A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
-----
L
K
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--------
I
--
A
------
R
G
IH-----------
N
L
------------------------
N
-------------
E
D
N
A
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--
P
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K
C
G
------
V
N
L
P
--------------
Y
T
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N
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C
S
R
V
---------------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
88.27
53%
-115
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
S
L
A
P
C
I
P
Y
V
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----
G
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-----
G
-------------------
A
-----
V
-----
P
-----
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
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R
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A
A
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N
C
-----
L
K
Q
--------
L
--
S
A
S
V---
P
--------------
G
V
------------------------
N
-------------
P
N
N
A
A
A
L
--
P
G
K
C
G
------
V
S
I
P
--------------
Y
K
I
S
A
S
T
N
C
A
T
V
K
--------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
87.72
45%
-118
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
N
L
A
Q
C
I
G
F
L
Q
----
K
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-----
G
-------------------
V
-----
V
-----
P
-----
P
S
C
---
C
T
G
V
K
N
I
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N
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R
-----------
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T
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R
A
V
C
S
C
-----
L
K
A
--------
A
--
A
------
G
A
VR-----------
G
I
------------------------
N
-------------
P
N
N
A
E
A
L
--
P
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K
C
G
------
V
N
I
P
--------------
Y
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T
N
C
N
S
I
N
--------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
62.83
24%
-104
- C4 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------------------------------------------
Q
H
L
R
A
C
Q
Q
W
I
R
----
Q
Q
LAG-
S
P
F
S
E
NQWGPQQGP-------
S
-----
L
-----
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-----
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
--
C
V
C
PT---
L
K
Q
--------
A
--
A
------
K
--------------
S
V
------------------------
R
VQGQHGPFQST
R
I
Y
Q
I
A
K
N
L
--
P
N
V
C
N
------
M
K
Q
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
60.80
23%
-122
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------
N
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
P
-------------------
R
-----
L
P
W
P
E
L
K
-----
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
-----
L
S
I
--------
L
--
M
------
D
--------------
G
A
I
P
P
G
PDAQL
E
G
R
L
-----------
E
D
LPGCP
R
E
V
Q
---
R
G
F
A
A
T
L
VT
E
A
E
C
N
------
L
A
T
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
56.84
31%
-87
- C4 -
1PSY
-
2SS_RICCO
A:
[25-122]
-------------------------------------------------------------------------------------------------
K
D
L
S
S
C
E
R
Y
L
R
----
Q
S
S
S
--
R
R
S
T
GEEVLRMPGDENQQQES
Q
-----
Q
-----
L
-----
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Q
C
---
C
N
Q
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K
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V
-------------------
R
D
E
C
Q
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-----
I
K
Y
--------
I
--
A
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--------------
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L
HGEE
S
E
R
-----------------
V
-------------
A
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R
A
G
E
I
--
V
S
S
C
G
------
V
--
R
--------------
C
M
R
Q
T
----------------------------------------------------------------------------------------------------------------------------------------------
14
SP3
56.65
16%
-83
- C4 -
1DIN
-
?
?:
[1-233]
MLTEG
I
S
I
Q
S
YDG
H
T
F
G
A
L
V
G
S
P
AKAP
A
P
V
I
V
I
A
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E
IFGVN
A
F
M
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A
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C
P
DLYARQAPG
T
A
L
D
PQD
E
R
Q
R
E
Q
A
Y
K
L
W
Q
A
F
D
M
E
A
G
V
G
D
L
E
A
A
I
R
Y
A
R
----
H
Q
----
P
Y
-------------------
S
-----
N
-----
G
K
V
G
L
V
G
Y
C
---
L
G
G
A
L
A
F
L
V
A
A
K
-----------
G
Y
V
D
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R
A
V
------------------
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--
Y
------
Y
--------------
G
V
------------------------
G
-------------
L
E
K
Q
L
N
K
--
V
P
E
--------
V
K
H
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--------------
A
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M
G
G
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D
H
F
V
P
A
P
S
R
Q
L
I
T
E
G
F
G
A
N
PL
L
Q
V
H
W
YEEAGHSFARTSSSGYV
A
S
A
A
A
L
A
N
E
R
T
L
D
F
L
APLQS----------------------------------------------------------------------------
2
Fugue
56.02
24%
-79
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
E
L
N
E
C
K
P
A
V
S
----
K
E
----
N
P
-------------------
T
-----
S
-----
P
S----
Q
P
C
---
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Q
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A
---------------------
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F
A
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A
S
A
L
--
P
K
Q
C
G
------
L
A
N
A
--------------------
P
T
C
------------------------------------------------------------------------------------------------------------------------------------------
20
SP3
52.36
13%
-66
- C4 -
1A0P
-
?
?:
[3-292]
---------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KNLA
E
N
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A
Y
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M
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----
H
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----
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---
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A
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-----
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F
Q
--------
Y
--
L
------
Y
R
E
KFREDDPSAHLK
D
L
------------------------
S
-------------
E
A
Q
V
E
R
L
--
L
Q
A
P
L
------
I
D
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P
L
E
L
R
D
K
A
M
L
E
V
L
Y
A
T
G
L
R
V
S
-
E
L
V
G
L
T
MSDISLRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
T
H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
T
E
R
L
R
Q
L
H
Q
34
HHSearch
50.50
19%
-114
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------
E
M
L
N
H
C
G
M
Y
L
M
----
K
N
LGER
S
Q
VSPR
M
R
E
E
-----------
D
-----
H
-----
K
-----
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
-----
I
M
M
--------
M
--
L
------
N
--------------
E
P
------------------------
M
WIRMR
D
Q
V
-----
M
S
M
A
H
N
L
--
P
I
E
C
N
------
L
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
50.19
16%
-97
- C4 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------
N
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CGV
G
P
-------------------
R
LA
T
Q
E
M
-----
K
-----
A
R
C
---
C
R
Q
L
E
A
I
-------------------
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A
Y
C
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C
E
A
-----
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R
I
--------
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--
M
------
D
--------------
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V
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T
PSG
Q
H
E
G
RLLQDLPGCP
R
Q
V
Q
R
A
-------------
F
A
P
K
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V
T
--
E
V
E
C
N
------
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A
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I
--------------
H
--------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
48.31
25%
-77
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
E
L
N
E
C
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A
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----
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E
----
N
P
T------------------
S
-----
P
-----
S
-----
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
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C
G
Y
-----
K
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--------
P
W
-
L
G
S
----
F
--------------
G
V
------------------------
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-------------
P
E
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A
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A
L
--
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C
G
------
L
A
N
A
--------------
P
--------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
47.98
31%
-92
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------
A
G
C
--
N
A
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Q
L
T
V
C
T
G
A
I
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----
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A
-------------------
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-----
P
-----
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-----
A
A
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---
C
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S
L
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A
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C
-----------
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F
A
K
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P
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Y
G
R
Y
-----
V
N
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--------
P
------------------------------------------------------------------
N
A
R
K
A
--
V
S
S
C
G
------
I
A
L
P
--------------
T
-------
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
13
SP3
47.27
15%
-105
- C4 -
1QPO
-
NADC_MYCTU
A:
[116-284]
----------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
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G
G
V
N
H
R
LGLGD
A
A
L
I
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D
N
H
V
A
A
A
------
G
S
V
V
D
A
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R
A
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----
N
A
-------------------------
A
-----
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-----
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-----
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P
C
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EKPE
L
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LDNF
A
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-----
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RAPT
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--
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------
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--------------
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--
A
E
-
T
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------
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-----------------
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A
V
G
A
L
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H
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V
R
VL
D
I
G
L
D
M------------------------------------------------------------------------------------------------------------------------------
12
SP3
43.93
21%
-65
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
Q
L
T
V
C
T
G
A
I
A
----
G
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----
A
R
-------------------------
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-----
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A
C
---
C
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S
L
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A
--------------------
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Q
G
C
F
C
Q
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-----
A
K
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PR------
Y
--
G
------
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--------------
Y
V
------------------------
N
-------------
S
P
N
A
R
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A
--
V
S
S
C
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------
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A
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P
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T
C
H
-----------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
40.36
21%
-25
- C2 -
4B9G
-
CSSA1_ECOLX (first)
A:
[16-161]
-------------------------------------------------------------D
I
D
S
A
V
R
I
I
P
V
N
Y
DSDPKLNSQL
Y
T
V
E
M
T
I
P
A
G
V
------------
S
----
A
V
----
K
I
-------------------
V
-----
P
-----
T
-----
D
S
L
---
T
S
S
G
Q
Q
I
G
K
L
V
N
-----------
V
N
N
P
D
Q
N
M
N
Y
Y
-----
I
R
K
--------
D
SG
A
------
G
--------------
K
F
------------------------
M
-------------
A
G
Q
K
G
S
F
--
S
V
K
E
N
------
T
--
S
--------------
Y
T
F
S
A
I
Y
T
G
G
E
Y
P
NSGY
S
S
G
T
Y
A
G
H
L
T
V
S
F
Y
S
N
D
NK
Q
R
T
E
IATKN
F
P
V
S
T
T
I
S----------------------------------------------------------------------------------------------
18
SP3
40.05
14%
-30
- C4 -
1DLW
1
TRHBN_PARCA
A:
[1-116]
-------------------------------------------------------S
L
F
E
Q
L
GG
Q
A
A
V
Q
A
V
T
A
Q
F
Y
A
N
I
Q
A
DATVATFFN
G
I
D
M
P
N
Q
T
N
K
T
A
A
F
L
C
A
A
L
----
G
G
----
P
N
-------------------
A
-----
W
-----
T
-----
G
---------
R
N
L
K
E
V
H
A
NMGV-------
S
N
A
Q
F
T
T
V
I
G
H
-----
L
R
S
--------
A
--
L
------
T
G
A
------------
G
V
------------------------
A
-------------
A
A
L
V
E
Q
T
--
V
A
V
A
E
T
V
R
GDV
V
T
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AIPCGQVNSALASCVSYAKGSGASPPGACCSGVRRLAGLARSTADKQAACRCIKSAAGGLNPGKAASIPSKCGVSIPYSISASVDCSKIH
41
97.97
100%
-123
- C- -
M041
-
A:
[1-130]
A
I
P
C
G
Q
V
N
S
A
L
A
S
C
V
S
Y
A
K
G
S
G
A
S
P
P
G
A
C
C
S
G
V
R
R
L
A
G
L
A
R
S
T
A
D
K
Q
A
A
C
R
C
I
K
S
A
A
G
G
L
N
P
G
K
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
S
I
S
A
S
V
D
C
S
K
I
H
39
96.91
100%
-118
- C- -
M039
-
A:
[1-96]
A
I
P
C
G
Q
V
N
S
A
L
A
S
C
V
S
Y
A
K
G
S
G
A
S
P
P
G
A
C
C
S
G
V
R
R
L
A
G
L
A
R
S
T
A
D
K
Q
A
A
C
R
C
I
K
S
A
A
G
G
L
N
P
G
K
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
S
I
S
A
S
V
D
C
S
K
I
H
45
94.64
100%
-116
- C- -
M045
-
A:
[1-130]
A
I
P
C
G
Q
V
N
S
A
L
A
S
C
V
S
Y
A
K
G
S
G
A
S
P
P
G
A
C
C
S
G
V
R
R
L
A
G
L
A
R
S
T
A
D
K
Q
A
A
C
R
C
I
K
S
A
A
G
G
L
N
P
G
K
A
A
S
I
P
S
K
C
G
V
S
I
P
Y
S
I
S
A
S
V
D
C
S
K
I
H