@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu03920: (2016-06-06 )
MDLLLALLPALFWGSIVLFNVKLGGGPYSQTLGTTIGALIVSIVIYFFVQPVLSLRIFIVGIVSGLFWSLGQANQLKSIQLMGVSKTMPISTGMQLVSTSLFGVIVFREWSTPIAITLGVLALIFIIVGIILTSLEDKNDKKEGEPSNLKKGILILLVSTLGYLVYVVVARLFNVSGWSALLPQAIGMVVGGLVLTYRHKPFNKYAIRNILPGLIWAGGNMFLFISQPRVGVATSFSLSQMGIVISTLGGIFILREKKTKRQLIAIAIGIILIIAAAVFLGIAKTNS
Atome Classification :
(17 SA)
------------------------------------------------------------......-----...10........20...-----...---..30........40----.....-....50.....--...60........-70........80....----....-90.......-----..100------..--.......110..--------------------.....120.......---130.......140.----......150.--....-.-------..160.....-----------------------..170.......180....------------...190---------......----..200.......------210.......-------220-....--...230.....-..240.......250-.---....------...260......-.270.......280.....---------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------M
D
L
L
L
A
-----
L
L
P
A
L
F
WG
S
I
V
L
F
N
V
K
LG-----GGP---
Y
S
Q
T
L
G
T
T
I
G
A
L
I
-----
V
S
I
V
I
-
Y
F
F
V
Q
P
V
L
S
L
R
--
I
F
I
V
G
I
V
S
G
L
F
W
S-LGQANQ
L
K
S
I
Q
L
M
GVS----KTMP-I-
S
T
G
M
Q
L
V
-----
S
TS--------
L
F
--
G
V
I
V
F
REWST
P
I
--------------------
A
I
T
L
G
V
L
A
L
I
F
I
I
V
G
---
I
I
L
TSLEDKNDKKE----GE
P
S
N
L
K
K
-
G
--
I
L
I
L
-
L
-------
V
S
T
L
G
Y
L
V
Y
V
-----------------------
V
V
A
R
L
FNVS
G
W
S
A
L
L
P
Q
A
I
------------
G
M
V
V
G
----------
G
L
V
L
T
Y
----RHKP
F
N
K
Y
A
I
R
N
------IL
P
G
L
I
WAGG-------
N
M
F
-
L
F
IS--QPRV
G
V
A
T
SF
S
-
L
S
QM
G
I
V
I
STL
G
G
I
--
F
---
I
L
RE------KKTK
R
Q
L
I
A
I
A
I
-
G
I
I
L
I
I
A
A
A
V
F
L
GIAKTNS---------------------------------------------
12
Fugue
77.13
18%
-168
- C1 -
4ZOX
-
SQT1_YEAST
A:
[53-431]
MSNNSL
T
Y
F
D
KHTDSVF
A
I
G
H
H
PNLP
L
V
C
T
G
GGDN
L
A
H
L
W
T
SHSQPPKFA
G
T
L
T
GYGESV
I
S
C
S
F
T
SEGG
F
L
V
T
A
D
M
S
G
K
V
L
V
H
M
G
Q
K
G
-----
G
A
Q
---
W
K
L
A
S
Q
M
Q
E
---------
V
E
E
I
V
-
W
L
K
T
H
P
T
I
A
-
R
--
T
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A
F
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A
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Y
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E
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L
E
Q
L
M
S
G
----
F
V
H
Q
-
Q
-
D
C
S
M
G
E
F
I
NTDK
G
E
N
--------
T
L
--
E
L
V
T
C
S
L
D
S
T
I
V
--------------------
A
W
N
C
F
T
G
Q
Q
L
F
K
I
T
Q
---
A
E
I
K
G
L
E
A
P
W
I
S
L
S
----
L
A
P
E
T
L
T
K
-
G
NS
G
V
V
A
-
C
-------
G
S
N
N
G
L
L
A
V
I
N
CNNGGAIL
H
L
S
T
V
I
E
L
K
PEQDE
L
D
A
S
I
E
S
I
S
W
S
S
K
F
S
L
M
A
I
------------
G
L
V
C
G
----------
E
I
L
L
Y
D
TS--
A
W
R
V
R
H
K
F
V
L
E
D
------
S
V
T
K
L
M
F
D
N
D
-------
D
L
F
-
A
S
C
I
--
N
G
K
V
Y
Q
F
N
A
R
T
-
G
Q
E
K
F
V
C
V
G
H
N
M
G
V
L
D
F
---
I
L
L
H
PVANTG
T
E
Q
K
R
K
V
I
T
A
G
D
E
G
V
S
L
V
F
E
V
P
N
------------------------------------------------------
17
Fugue
72.71
15%
-171
- C2 -
4XGC
1
ORC2_DROME
B:
[62-352]
-----------------------------------------------------E
G
S
I
N
A
I
M
E
E
Y
R
S
-----
Y
F
P
K
W
M
C
I
L
N
E
G
F
N
I
L
L
Y
-----
G
L
G
---
S
K
H
Q
L
L
Q
S
F
H
R
E
V
LHKQT
V
L
V
V
N
-
G
F
F
--
P
S
L
T
I
K
--
D
M
L
D
S
I
T
S
D
I
L
D
A
G
I
S
P
A
N
P
H
E
A
V
D
M
I
E
E
E
----
F
A
L
I
-
P
-
E
T
H
L
F
L
I
-----
V
H
N
--------
L
D
--
G
A
M
L
R
N
V
K
A
Q
A
I
--------------------
L
S
R
L
A
R
I
P
N
I
H
L
L
A
S
---
I
D
H
I
N
T
P
L
L
W
D
Q
G
K
----
L
C
S
F
N
F
S
W
-
W
--
D
C
T
T
-
M
-------
L
P
Y
T
N
E
T
A
F
E
-----------------------
N
S
L
L
V
L
A
L
S
S
M
R
S
V
F
S
S
--------------------------------
L
T
T
----
N
S
R
G
I
Y
M
L
I
V
K
Y
------
Q
L
K
N
---
K
G
N
-------
A
T
G
-
M
P
F
R
--
D
L
Y
S
S
C
R
E
A
F
L
-
V
S
S
D
L
A
L
R
A
Q
L
T
E
F
--
L
D
H
K
L
V
K
S
------
K
R
S
S
E
Q
L
T
--------
I
P
I
D
G
A
L
L
Q
Q
F
L
E
E
Q
E
---------------------------------------------
13
Fugue
69.24
16%
-119
- C2 -
4OKO
2
?
A:
[4-303]
--------------------------------------------------------------
Q
Y
H
I
-----
G
T
P
G
K
K
W
G
S
E
E
K
S
Q
W
L
A
E
-----
Q
N
K
KRS
Y
Q
Q
E
A
E
K
K
I
L
A
L
V
-----
S
D
F
D
I
-
D
E
Y
G
Q
L
D
Y
P
V
G
--
S
Y
K
L
Y
A
L
K
T
K
N
W
D
-
A
S
K
P
Y
V
L
V
T
G
G
V
H
G
Y
-----
E
T
S
G
-
V
-
Q
G
A
I
S
F
A
-----
Q
T
R
----------------
A
L
E
F
A
R
D
Y
--------------------
N
I
V
I
L
P
C
L
S
P
W
G
Y
E
T
---
I
N
R
W
N
P
N
A
L
D
P
N
R
S
F---
Y
L
E
S
G
C
Q
E
-
A
--
V
L
A
M
K
Y
-------
V
F
S
L
G
V
E
F
L
M
-----------------------
H
I
D
L
H
E
T
T
D
T
D
D
S
E
F
R
P
A
L
------------
A
A
R
E
G
IAIN
K
W
G
I
P
D
G
F
Y
L
V
A
NNRN
P
H
Y
D
F
Q
K
Y
I
I
D
A
V
A
K
V
TH
I
A
P
T
I
I
R
D
G
----------
I
-
M
A
C
D
--
S
D
K
E
R
L
C
M
S
F
T
-
T
A
E
Y
T
T
T
T
E
V
Y
-----------
P
D
------
S
P
R
T
N
P
Q
E
C
I
L
A
-
Q
V
E
A
I
V
A
G
L
N
F
L
K
Q
K
-------------------------------------------------
16
Fugue
63.07
16%
-136
- C2 -
4J1Q
1
A:
[20-445]
-----------------------------H
M
E
R
L
M
L
E
P
V
WEKQNEELSYT
E
H
I
I
V
L
F
ETE
R
S
V
T
D
S
-----
I
A
S
H
M
K
D
A
R
V
I
T
L
N
E
A
V
G
H
I
A
E
R
Y
Q
C
---
Y
M
Q
N
I
F
E
L
L
Q
S
K
V
-----
R
K
L
S
A
G
R
I
I
I
Q
A
I
V
P
L
E
KE
K
Q
L
F
A
G
V
S
G
L
F
K
T
-
A
E
I
E
F
S
K
L
T
A
Q
V
I
E
I
E
----
K
P
E
E
M
I
-
D
L
H
L
K
L
K
-----
D
D
S
R
R
PFDK
Q
I
R
Y
E
A
G
Y
R
F
V
K
G
W
R
E
M
V
D
T
L
H
M
PWRD
E
G
V
Y
L
I
TGGAG
S
L
G
L
L
F
A
K
E
I
A
N
R
T
G
R
S
T
I
V
L
T
G
R
S
V
L
S
E
D
K
E
----
N
E
L
E
A
L
R
S
I
G
--
A
E
V
V
-
Y
READVSD
Q
H
A
V
R
H
L
L
E
E
-----------------------
I
K
E
R
Y
G
T
L
N
G
----
I
I
H
G
A
------------
G
S
S
K
D
----------
R
F
I
I
H
K
----
T
N
E
E
F
Q
E
V
L
-
Q
P
------
K
V
S
G
L
L
H
V
D
E
C
S
KDFPL
D
F
F
-
I
F
F
S
SV
S
G
C
L
G
N
A
G
Q
A
D
-
Y
A
A
A
N
S
F
M
D
A
F
A
E
Y
--
R
---
R
S
L
A
------
A
S
K
K
R
F
G
S
T
I
S
F
-
N
W
P
L
W
E
E
G
G
M
Q
V
G
A
E
D
E
K
R
M
L
K
T
T
GMVPMP
T
D
S
G
L
K
A
F
Y
Q
G
I
V
S
DKP
Q
V
F
V
M
E
G
Q
L
Q
K
M
K
Q
K
LL
15
Fugue
58.67
19%
-201
- C2 -
4O6Y
3
ACFR2_ARATH
A:
[10-219]
-----------------------------------------------------------P
I
F
M
V
V
R
-----
V
L
G
F
I
I
A
A
L
V
L
T
W
T
V
H
Y
R
-----
G
G
L
---
A
L
S
S
D
--------------
N
K
D
H
-
I
F
N
V
H
P
V
M
M
V
I
--
G
L
I
-----------------
L
F
N
G
E
A
M
L
A
Y
----
K
S
V
Q
-
G
-
T
-------------------------------
K
N
L
K
K
L
V
--------------------
H
L
T
L
Q
L
T
A
F
I
L
S
L
I
G
---
V
W
A
A
L
K
F
H
I
D
K
G
I
E
----
N
F
Y
S
-------------
L
-------
H
S
W
L
G
L
A
C
L
F
-----------------------
L
F
A
F
Q
W
A
A
G
F
V
T
Y
W
Y
P
G
G
-------------------------------------------
S
R
N
S
R
A
S
------
L
M
P
W
H
V
F
L
G
I
-------
S
I
Y
A
L
A
L
V
--
T
A
T
T
G
I
L
E
K
V
T
-
F
L
Q
V
N
Q
V
I
T
R
Y
S
--------------------
T
E
A
M
L
V
N
T
M
G
-
V
L
I
L
I
L
G
G
F
V
I
L
G
V
V
T
------------------------------------------------
9
HHSearch
41.20
25%
-324
- C3 -
2JO1
-
PLM_HUMAN
A:
[22-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
-
A
G
I
L
F
I
L
G
I
L
I
V
L
S
--------------------------------------------------
18
Fugue
40.80
14%
-179
- C2 -
1BTK
2
BTK_HUMAN
A:
[1-169]
----------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
V
I
L
E
S
I
F
L
K
R
S
QQKK
K
T
S
P
-
L
-
N
F
K
K
C
L
F
-----
L
L
T
--------
V
H
--
K
L
S
Y
Y
E
Y
D
F
E
R
G
--------------------
R
R
G
S
K
K
G
S
I
D
V
E
K
I
T
---
C
V
E
T
V
V
P
E
K
N
P
P
P
E
RQIM
E
Q
I
S
I
I
E
R
-
F
--
P
Y
P
F
-
Q
-------
V
V
Y
D
E
G
P
L
Y
V
-----------------------
F
S
P
T
E
E
L
R
K
R
W
I
H
Q
L
K
N
V
I
R
YNSDLVQKYHP
C
F
W
I
D
----------
G
Q
Y
L
C
C
----
S
Q
T
A
K
N
A
M
G
C
Q
I
------
L
E
N
-----------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
24.39
15%
-
* C3 *
3B5D
1
EMRE_ECOLI
A:
[34-105]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
T
I
I
C
Y
C
A
S
-------
F
W
L
-
L
A
Q
T
--
L
A
Y
I
P
T
G
I
A
Y
A
I
W
S
G
V
G
I
V
L
I
S
L
L
S
W
--
G
---
F
F
G
Q
------
R
L
D
L
P
A
----
I
I
-
G
M
M
L
I
C
A
G
V
L
I
I
N
L
L
S
------------------------------------------------
10
HHSearch
23.84
13%
-
- C3 -
2ZXE
-
?
G:
[25-40]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
-
A
A
V
L
C
V
I
G
I
I
I
L
L
A
--------------------------------------------------
1
HHSearch
23.50
14%
-
- C3 -
3B5D
1
EMRE_ECOLI
A:
[30-105]
------------------------------------------------------------------------------------------------------------------------------------------
L
W
P
S
V
G
T
I
I
C
Y
C
-
A
S
F
W
L
L
A
Q
T
L
A
Y
I
P
T
G
----
I
A
Y
A
-
I
W
S
G
-
V
G
I
V
-----
L
I
S
--------
L
L
--
S
W
G
F
F
G
Q
R
L
D
L
P
--------------------
A
I
----
I
G
M
M
L
I
C
A
G
---
V
L
I
I
N
L
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
22.89
21%
77
- C3 -
2JPW
2
TNNI3_MOUSE
A:
[1-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
D
E
S
S
D
A
A
----
G
E
P
Q
P
A
P
A
-
P
--
V
R
---
R
-------
R
S
S
A
N
Y
R
A
Y
A
-----------------------
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
21.60
17%
-76
* C2 *
3BPQ
-
RELB3_METJA
A:
[8-48]
------------------------------------------------------------------------------------------------------------------------------------------------
K
K
F
F
I
S
-
R
K
E
Y
E
K
I
E
E
I
L
D
I
G
L
A
----
K
A
M
E
-
E
-
T
K
D
D
E
L
L
-----
T
Y
D
--------
E
I
--
K
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
16.02
28%
387
- C3 -
3RA3
-
?
B:
[3-27]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
L
K
Q
K
N
A
R
L
K
----
Q
E
I
A
A
L
E
Y
-
E
--
I
A
A
L
-
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
10.45
6%
76
- C3 -
2HAC
-
CD3Z_HUMAN
A:
[12-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
V
--------
I
L
--
T
A
L
F
L
R
V
K
F
S
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
8.12
36%
0
- C- -
3WU2
-
PSBT_THEVL
T:
[17-8]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
--------
F
F
--
F
A
I
F
F
R
E
P
P
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
2.07
17%
0
- C- -
4PJ0
-
PSBY_THEEB
R:
[8-25]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
P
-
V
-------
L
L
A
A
G
W
A
V
R
N
-----------------------
I
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
2.07
17%
0
- C- -
4UB6
-
PSBY_THEVL
R:
[7-24]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
L
P
-
V
-------
L
L
A
A
G
W
A
V
R
N
-----------------------
I
L
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------