@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu15420: (2016-06-24 )
MPLTPNDIHNKTFTKSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERIGHFANIEETLNKSILVAQEAAEDVKRNSQKEAKLIVREAEKNADRIINESLSKSRKIAMEIEELKKQSKVFRTRFQMLIEAQLDLLKNDDWDHLLEYEVDAVFEEKE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40....-----....----50........60........--70........80........90........100.......110.......120.......130.......140.......150.......160..-------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPLTPNDIHN
K
T
F
T
K
S
FRGY
D
E
D
E
V
N
E
F
L
A
Q
V
R
K
D
Y
E
I
V
LRKK
T
E
-----
L
E
A
K
----
V
N
E
L
D
E
R
I
G
H
F
A
N
I
E
E
T
L
N
K
--
S
I
L
V
A
Q
E
A
A
E
D
V
K
RN
S
Q
K
E
A
K
L
I
V
R
E
A
EK
N
A
D
R
I
I
N
E
S
L
S
K
S
R
K
I
A
M
E
I
E
E
L
K
K
Q
S
K
V
F
R
T
R
F
Q
M
L
I
E
A
Q
L
D
L
LKNDD
W
D
H
L
L
E
Y
E
V
D
A
VFEEKE-------------------------------------------------
2
PsiBlast_PDB
73.43
98%
-91
- C4 -
2WUK
-
DIV4A_BACSU
A:
[2-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
T
P
N
D
I
H
N
K
T
F
T
K
S
A
R
G
Y
D
E
D
E
V
N
E
F
L
A
Q
V
R
K
D
Y
E
I
V
L
R
K
K
T
E
-----
L
E
A
K
----
V
N
E
L
D
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
70.31
100%
-72
- C4 -
2WUJ
-
DIV4A_BACSU
A:
[3-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
N
D
I
H
N
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
Q
V
R
K
D
Y
E
I
V
L
R
K
K
T
E
-----
L
E
A
K
----
V
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
70.31
100%
-72
- C4 -
2WUJ
-
DIV4A_BACSU
A:
[3-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
N
D
I
H
N
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
Q
V
R
K
D
Y
E
I
V
L
R
K
K
T
E
-----
L
E
A
K
----
V
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.31
100%
-72
- C4 -
2WUJ
-
DIV4A_BACSU
A:
[3-52]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
P
N
D
I
H
N
K
T
F
T
K
S
F
R
G
Y
D
E
D
E
V
N
E
F
L
A
Q
V
R
K
D
Y
E
I
V
L
R
K
K
T
E
-----
L
E
A
K
----
V
N
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
50
Fugue
60.71
31%
-131
- C4 -
4UG1
4
GPSB_LISMO
A:
[1-70]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
H
M
T
S
E
Q
F
E
Y
H
L
T
G
K
E
I
L
E
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
M
V
I
K
D
Y
S
T
F
T
Q
E
I
E
A
-----
L
Q
A
E
----
N
I
R
L
V
Q
E
L
D
N
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
57.66
31%
-121
- C4 -
4UG1
1
GPSB_LISMO
A:
[12-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
T
G
K
E
I
L
E
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
M
V
I
K
D
Y
S
T
F
T
Q
E
I
E
A
-----
L
Q
A
E
----
N
I
R
L
V
Q
E
L
D
N
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
56.51
27%
-186
- C4 -
4UG3
-
GPSB_BACSU
A:
[6-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
L
S
A
K
E
I
L
E
K
E
F
K
T
G
V
R
G
Y
K
Q
E
D
V
D
K
F
L
D
M
I
I
K
D
Y
E
T
F
H
Q
E
I
E
E
-----
L
Q
Q
E
----
N
L
Q
L
K
K
Q
L
E
E
------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
56.30
39%
-123
- C4 -
4UG1
1
GPSB_LISMO
A:
[13-68]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
G
K
E
I
L
E
K
E
F
K
T
G
L
R
G
Y
S
P
E
D
V
D
E
F
L
D
M
V
I
K
D
Y
S
T
F
T
Q
E
I
E
A
-----
L
Q
A
E
N
I
R
L
V
Q
E
L
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.14
34%
-186
- C4 -
4UG3
-
GPSB_BACSU
A:
[6-52]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
K
L
S
A
K
E
I
L
E
K
E
F
K
T
G
V
R
G
Y
K
Q
E
D
V
D
K
F
L
D
M
I
I
K
D
Y
E
T
F
H
Q
E
I
E
E
-----
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
55
Fugue
49.39
22%
-40
- C1 -
4OK4
1
?
A:
[30-733]
HPNLIVT
E
Q
D
V
A
N
I
A
A
SWESY
D
A
Y
A
E
Q
L
N
A
D
K
T
N
L
D
A
F
M
A
E
G
V
V
V
P
MPKDAGGG
Y
T
H
E
Q
H
K
R
N
Y
K
A
I
R
N
A
G
F
L
Y
Q
V
TGD
E
K
Y
L
T
F
A
K
D
L
L
L
A
Y
A
K
M
YPSLGEHPNRKEQSPGRLFWQS
L
N
E
A
V
W
L
V
Y
S
I
Q
G
Y
D
A
I
IDGLA
A
E
E
K
Q
E
I
E
S
G
V
F
L
P
M
A
K
F
L
S
V
ES
P
E
T
F
N
KIH
N
L
G
T
W
A
V
A
A
V
G
M
T
G
Y
V
L
GN
D
E
L
V
E
I
S
L
MGLDKTGKAG
F
M
K
Q
L
D
K
LFSPDGYYTEG
P
Y
Y
Q
R
Y
A
L
M
P
F
I
W
F
A
K
A
I
E
T
N
EPERKIFEYRNN
I
L
L
K
A
V
Y
T
T
I
D
L
SYAGYFFPINDALKDKGIDT
V
E
L
V
H
A
L
A
I
V
Y
S
I
TGD
N
T
L
L
D
I
A
Q
E
Q
GRISLT
G
D
G
L
K
V
A
K
A
V
G
E
GL
T
Q
P
Y
N
Y
R
S
I
L
L
G
D
G
ADGDQ
G
A
L
S
I
H
R
L
G
E
G
HN
H
M
A
L
V
A
KNTSQGMGHGHFDKL
N
W
L
L
Y
D
NGNEIVTDYGAARYLNVEAKYGGHYLAENNTWAKQTIAHN
T
L
V
V
NEQSHFYGD
V
T
T
A
D
L
H
H
P
E
V
L
S
F
Y
S
G
ED
Y
Q
L
S
S
A
K
E
ANAYDG
V
E
F
V
R
S
M
L
L
V
N
V
PSLE
H
P
I
V
V
D
V
L
N
V
S
A
D
K
A
S
T
F
D
L
P
L
Y
F
N
---
G
Q
I
I
D
F
S
F
K
V
K
D
N
K
N
V
M
K
M
L
G
K
-
R
N
G
Y
Q
H
L
W
L
R
N
T
A
P
V
G
D
A
S
E
R
A
----
T
W
I
L
D
D
R
F
Y
S
Y
A
F
V
T
S
T
P
S
K
K
Q
N
V
L
I
A
E
L
G
A
N
D
-
P
N
Y
N
L
R
Q
Q
Q
V
L
I
R
R
V
E
K
----------------------------
A
K
Q
A
S
F
V
S
V
L
E
P
H
G
K
Y
D
G
S
L
E
T
T
S
G
A
Y
S
N
V
K
S
V
K
H
V
S
E
NG
K
D
V
V
V
V
D
L
KDG
S
N
V
V
V
A
L
SYNANSE
Q
V
H
K
V
N
AG
E
E
A
I
E
W
K
G
F
S
S
V
V
V
14
PsiBlast_PDB
49.22
33%
-79
- C4 -
4TNC
1
?
A:
[55-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
D
C
F
R
I
F
D
K
N
A
D
G
F
I
D
------------------------------------------------------------------------------------------------------------
38
HHSearch
49.14
30%
-
- C4 -
3V6I
-
?
B:
[10-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
E
K
E
K
Q
L
L
E
--
R
L
E
A
A
K
K
E
A
E
E
R
V
K
R
A
E
A
E
A
K
A
L
L
E
E
A
E
A
K
A
K
----------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
49.11
31%
19
- C4 -
2TN4
4
TNNC2_RABIT
A:
[52-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
E
L
F
R
I
F
D
R
N
A
D
G
Y
I
D
------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
48.93
31%
2
- C4 -
1TCF
2
TNNC2_RABIT
A:
[52-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
E
L
F
R
I
F
D
R
N
A
D
G
Y
I
D
------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
48.43
31%
23
- C4 -
1TN4
3
TNNC2_RABIT
A:
[52-111]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
E
L
F
R
I
F
D
R
N
A
D
G
Y
I
D
------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
47.87
33%
-40
- C4 -
1TOP
2
TNNC2_CHICK
A:
[55-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
N
C
F
R
I
F
D
K
N
A
D
G
F
I
D
------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
47.77
33%
-32
- C4 -
5TNC
1
TNNC2_MELGA
A:
[55-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
E
D
C
F
R
I
F
D
K
N
A
D
G
F
I
D
------------------------------------------------------------------------------------------------------------
35
HHSearch
47.73
24%
-
- C4 -
3V6I
-
?
B:
[10-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
A
E
K
E
K
Q
L
L
E
R
L
E
A
A
K
K
E
A
E
E
R
V
K
R
A
E
A
E
A
K
A
L
L
E
E
A
E
A
K
A
------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
47.45
33%
-55
- C4 -
1NCZ
2
TNNC2_CHICK
A:
[55-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
N
C
F
R
I
F
D
K
N
A
D
G
F
I
D
------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
47.30
33%
-54
- C4 -
1NCX
2
TNNC2_CHICK
A:
[55-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
E
-----
L
D
A
I
----
I
E
E
V
D
E
D
G
S
G
T
I
D
F
E
E
F
L
-----
V
M
M
V
R
Q
M
K
E
D
A
K
G
K
S
E
E
E
L
A
N
C
F
R
I
F
D
K
N
A
D
G
F
I
D
------------------------------------------------------------------------------------------------------------