@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-29 )
AVSCGQVSSALSPCISYARGNGASPSAACCSGVRSLASSARSTADKQAVCKCIKSAAAGLNAGKAAGIPTKCGVSVPYAISSSVDCSKIH
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------.........10--.........------------20----.-----------------.-------------------.--------.-----..----..30........40........50..---.------.--.-.------.--------------.60-----------------------.----------.......--.70.......----------------.---80--........90--------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------AVSCGQVSSA---LSPCISYAR------------GN----G-----------------A-------------------S--------P-----SA----ACCSGVRSLASSARSTADKQAVCKCI---K------S--A-A------A--------------GL------------------------N----------AGKAAGI--PTKCGVSVPY----------------A---IS--SSVDCSKIH---------------------------------------------------------------------------------------------------------------------------------
11
SP3
94.50
68%
-118
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
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------------
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Q
----
G
-----------------
S
-------------------
G
--------
P
-----
S
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
---
K
------
N
--
A
-
A
------
A
G
VS-----------
G
L
------------------------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
----------------
T
---
I
S
--
T
S
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
93.09
69%
-128
- C4 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
A
---
I
A
P
C
I
S
Y
A
R
------------
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Q
----
G
-----------------
S
-------------------
G
--------
P
-----
S
A
----
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
R
R
A
A
C
N
C
L
---
K
------
N
--
A
-
A
------
A
G
VS-----------
G
L
------------------------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
----------------
T
---
I
S
--
T
S
T
D
C
S
R
V
N
---------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
89.21
47%
-124
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
L
---
V
R
P
C
L
S
Y
V
Q
------------
G
G
----------------------
P
-------------------
G
--------
P
-----
S
G
----
Q
C
C
D
G
V
K
N
L
H
N
Q
A
R
S
Q
S
D
R
Q
S
A
C
N
C
L
---
K
------
G
--
I
-
A
------
R
G
IH-----------
N
L
------------------------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
----------------
T
---
I
S
--
L
N
I
D
C
S
R
V
----------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
86.76
57%
-120
- C4 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-----------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
N
---
L
A
P
C
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A
Y
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------------
N
T
----
G
----------------------------------------------
P
-----
L
G
----
R
C
C
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A
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N
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A
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A
C
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C
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---
K
------
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--
A
-
A
G
A
I---
S
--------------
G
I
------------------------
N
----------
L
G
K
A
A
G
L
--
P
S
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C
G
V
N
I
P
Y
----------------
K
---
I
S
--
P
S
T
D
C
S
K
V
Q
---------------------------------------------------------------------------------------------------------------------------------
24
HHSearch
85.32
43%
-134
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
N
---
L
A
Q
C
I
G
F
L
Q
------------
K
G
----------------------
G
-------------------
V
--------
V
-----
P
P
----
S
C
C
T
G
V
K
N
I
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N
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R
T
T
A
D
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R
A
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C
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---
K
------
A
--
A
-
A
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A
V---
R
--------------
G
I
------------------------
N
----------
P
N
N
A
E
A
L
--
P
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C
G
V
N
I
P
Y
----------------
K
---
I
S
--
T
S
T
N
C
N
S
I
N
---------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
84.09
48%
-119
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-----------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
S
---
L
A
P
C
I
P
Y
V
R
------------
G
G
----------------------
G
-------------------
A
--------
V
-----
P
P
----
A
C
C
N
G
I
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N
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N
N
L
A
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R
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A
A
C
N
C
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---
K
------
Q
--
L
-
S
A
S
V---
P
--------------
G
V
------------------------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
----------------
K
---
I
S
--
A
S
T
N
C
A
T
V
K
---------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
63.72
30%
-106
- C4 -
1PSY
-
2SS_RICCO
A:
[25-121]
-------------------------------------------------------------------------------------------------
K
D
---
L
S
S
C
E
R
Y
L
R
------------
Q
S
S
S
--
R
-----------------
R
S
T
GEEVLRMPGDENQQQES
Q
--------
Q
-----
L
Q
----
Q
C
C
N
Q
V
K
Q
V
--------
R
D
E
C
Q
C
E
A
I
---
K
------
Y
--
I
-
A
E
D
Q
I
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Q
G
--------------
Q
L
HGEE
S
E
R
-----------------
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
----------------
M
---
R
Q
--------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
60.50
25%
-116
- C4 -
1SM7
-
?
A:
[13-101]
-------------------------------------------------------------------------------------------------
Q
H
---
L
R
A
C
Q
Q
W
I
R
------------
Q
Q
----
L
AG
S
--------------
P
F
S
E
NQWGPQQGP-------
S
--------
L
-----
R
E
----
Q
C
C
N
E
L
Y
Q
E
--------
D
Q
V
C
V
C
P
T
L
---
K
------
Q
--
A
-
A
------
K
--------------
S
V
RVQGQHGPFQST
R
-----------
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
59.42
21%
-132
- C4 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-------------------------------------------------------------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
T
S
R
TC--------
G
I
----
G
-----------------
P
-------------------
R
--------
L
P
W
P
E
L
K
R
----
R
C
C
R
E
L
A
D
I
--------
P
A
Y
C
R
C
T
A
L
---
S
------
I
--
L
-
M
------
D
--------------
G
A
I
P
P
G
PDAQL
E
G
R
L
-----------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
53.57
28%
-88
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
Q
---
L
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V
C
T
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I
A
------------
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-----
G
-----------------
A
-------------------
R
--------
P
-----
T
A
----
A
C
C
S
S
L
R
A
Q
Q
G
C
F
C
Q
F
A
K
D
----------
P
------
R
--
Y
-
G
------
R
--------------
Y
V
------------------------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
T
----------------------------
C
H
------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
53.54
20%
-121
- C4 -
1S6D
-
2SS8_HELAN
A:
[19-97]
-------------------------------------------------------------------------------------------------
E
M
---
L
N
H
C
G
M
Y
L
M
------------
K
N
LGER
S
-----------------
Q
-------------------
V
SPR
M
R
E
E
D
H
-----
K
Q
----
L
C
C
M
Q
L
K
N
L
D
--------
E
K
C
M
C
P
A
I
---
M
------
M
--
M
-
L
------
N
--------------
E
P
------------------------
M
WIRMR
D
Q
V
--
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
51.68
25%
-87
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
E
---
L
N
E
C
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P
A
V
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------------
K
E
----
N
-----------------
P
T------------------
S
--------
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-----
S
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----
P
C
C
T
A
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Q
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--------
A
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F
A
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C
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Y
K
NSP
W
------
L
--
G
-
S
------
F
--------------
G
V
------------------------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
---------------------------
P
T
C
-------------------------------------------------------------------------------------------------------------------------------------
12
SP3
50.26
21%
-79
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
Q
---
L
T
V
C
T
G
A
I
A
------------
G
G
----
A
-----------------
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----------------------------
P
-----
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A
----
A
C
C
S
S
L
R
A
---------
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Q
G
C
F
C
Q
F
A
---
K
------
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PR
Y
-
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------
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------------------------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
----------------------------
T
C
H
------------------------------------------------------------------------------------------------------------------------------------
15
SP3
50.23
13%
-64
- C4 -
1A0P
-
?
?:
[3-292]
---------------------------------------------------------------------Q
D
L
A
R
I
E
Q
F
L
D
A
L
W
L
E
KNLA
E
N
T
L
N
A
Y
R
R
D
---
L
S
M
M
V
E
W
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H
------------
H
R
----
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-----------------
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-------------------
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--------
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----
A
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D
D
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A
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E
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A
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A
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---
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------
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--
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KFREDDPSAHLK
D
L
------------------------
S
----------
E
A
Q
V
E
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--
L
Q
A
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Y
A
TGL
R
---
V
S
E
L
V
G
L
T
M
S
D
I
S
LRQG
V
V
R
V
I
G
KGNK
E
R
L
V
P
LG
E
E
A
V
Y
W
L
E
T
Y
L
E
HG
R
P
W
L
L
N
GVSIDVLFPSQRAQQMT
R
Q
T
F
W
H
R
I
K
H
Y
A
V
L
A
GIDSEKLS
P
H
V
L
R
H
A
F
A
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H
L
L
N
HGADLRVVQMLLSDLS
T
T
Q
I
Y
T
H
V
A
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E
R
L
R
Q
L
H
Q
26
HHSearch
49.96
25%
-91
- C4 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
E
---
L
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E
C
K
P
A
V
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------------
K
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----
N
-----------------
P
T------------------
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--------
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-----
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----
P
C
C
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A
L
Q
H
A
--------
D
F
A
C
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C
G
Y
K
---
N
------
S
--
P
W
L
G
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----
F
--------------
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------------------------
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----------
P
E
L
A
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A
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--
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Q
C
G
L
A
N
A
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
48.77
17%
-92
- C4 -
3OB4
-
?
A:
[428-485]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
----
R
C
C
N
E
L
N
E
F
E
------
N
N
Q
R
C
M
C
E
A
L
---
Q
------
Q
--
I
-
M
------
E
N
Q
S
DRLQ-------
G
R
Q
Q
E
Q
Q
-------------------
F
----------
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
46.40
17%
-40
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
A
EM
L
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C
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Y
L
M
KNLGERSQVSPR
M
R
----
E
-----------------
E
-------------------
D
--------
H
-----
K
Q
----
L
C
C
M
Q
L
K
N
L
D
E
K
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M
C
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A
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M
M
M
L
N
E
P
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---
W
------
I
--
R
-
M
------
R
--------------
D
Q
------------------------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
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L
M
----------------------------
S
Q
P
C
Q
M
-----------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
45.84
16%
-102
- C4 -
1B1U
-
IAAT_ELECO
A:
[15-109]
-------------------------------------------------------------------------------------------------
N
P
---
L
D
S
C
R
W
Y
V
S
------------
T
R
T
CGV
G
-----------------
P
-------------------
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LA
T
Q
E
---
M
-----
K
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----
R
C
C
R
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A
Y
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R
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E
A
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---
R
------
I
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-
M
------
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--------------
G
V
V
T
PSG
Q
H
E
G
RLLQDLPGCP
R
Q
V
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R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
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------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
SP3
43.14
17%
-62
- C4 -
1DIN
-
?
?:
[1-233]
MLTEG
I
S
I
Q
S
YDG
H
T
F
G
A
L
V
G
S
P
AKAP
A
P
V
I
V
I
A
Q
E
IFGVN
A
F
M
R
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V
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W
L
V
D
Q
G
Y
A
A
V
C
P
DLYARQAPG
T
A
L
D
PQD
E
R
Q
R
E
Q
A
Y
K
L
W
Q
A
F
D
M
E
A
G
V
G
D
---
L
E
A
A
I
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Y
A
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------------
H
Q
----
P
-----------------
Y
-------------------
S
--------
N
-----
G
K
V
G
L
V
G
Y
C
L
G
G
A
L
A
F
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A
A
K
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Y
V
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R
A
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------------------
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------
Y
--------------
G
V
------------------------
G
----------
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Q
L
N
K
--
V
P
E
--
V
K
H
P
A
----------------
L
---
F
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--
M
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G
Q
D
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F
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A
P
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R
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I
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E
G
F
G
A
N
PL
L
Q
V
H
W
YEEAGHSFARTSSSGYV
A
S
A
A
A
L
A
N
E
R
T
L
D
F
L
APLQS-----------------------------------------------------------------------
4
Fugue
41.85
14%
-38
- C4 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
D
R
VN-
L
K
P
C
E
Q
H
I
M
------------
Q
R
----
I
MGEQEQYDSYDIRSTR
S
S
-------------------
D
--------
Q
-----
Q
Q
----
R
C
C
D
E
L
N
E
M
E
N
T
Q
G
C
M
C
E
A
L
Q
Q
I
M
E
N
---
Q
CDRLQD
R
--
Q
-
M
------
V
--------------
Q
Q
------------------------
F
----------
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
----------------
R
CDL
D
V
--
S
G
G
R
C
S
------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AVSCGQVSSALSPCISYARGNGASPSAACCSGVRSLASSARSTADKQAVCKCIKSAAAGLNAGKAAGIPTKCGVSVPYAISSSVDCSKIH
43
42.08
100%
-
- C- -
M043
-
A:
[1-96]
A
V
S
C
G
Q
V
S
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
S
P
S
A
A
C
C
S
G
V
R
S
L
A
S
S
A
R
S
T
A
D
K
Q
A
V
C
K
C
I
K
S
A
A
A
G
L
N
A
G
K
A
A
G
I
P
T
K
C
G
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
H
41
42.08
100%
-
- C- -
M041
-
A:
[1-130]
A
V
S
C
G
Q
V
S
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
S
P
S
A
A
C
C
S
G
V
R
S
L
A
S
S
A
R
S
T
A
D
K
Q
A
V
C
K
C
I
K
S
A
A
A
G
L
N
A
G
K
A
A
G
I
P
T
K
C
G
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
H
40
42.08
100%
-
- C- -
M040
-
A:
[1-96]
A
V
S
C
G
Q
V
S
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
S
P
S
A
A
C
C
S
G
V
R
S
L
A
S
S
A
R
S
T
A
D
K
Q
A
V
C
K
C
I
K
S
A
A
A
G
L
N
A
G
K
A
A
G
I
P
T
K
C
G
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
H
39
42.08
100%
-
- C- -
M039
-
A:
[1-96]
A
V
S
C
G
Q
V
S
S
A
L
S
P
C
I
S
Y
A
R
G
N
G
A
S
P
S
A
A
C
C
S
G
V
R
S
L
A
S
S
A
R
S
T
A
D
K
Q
A
V
C
K
C
I
K
S
A
A
A
G
L
N
A
G
K
A
A
G
I
P
T
K
C
G
V
S
V
P
Y
A
I
S
S
S
V
D
C
S
K
I
H