@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 113_tII_WHEAT: (2014-05-01 )
ASCNAGQLTVCASAMLSGAAPSAACCSNLKAQQGCLCQFAKNPAYARYVNSPNARKTVASCGVALPRC
Atome Classification :
(20 SA)
----------------------------------------------------------------...-----.--..--..---.10....--.--..--.--20.-----.-----------.---------......30----------.-----------.-----.-......40----..-.------------..-----..--------.50--..---------.-.....60.....---------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------ASC-----N--A
G
--
Q
L
---
T
V
C
A
S
A
M
--L--SG--A--A-P-----
S
-----------
A
---------
A
C
C
SNLK-----------A-----------Q-----Q-G
C
L
C
Q
FAK----NP-A------------
Y
A
-----
R
Y--------VNS--PN---------A-
R
K
T
V
A
SCGVALP---------RC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
95.07
74%
-125
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
---------
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
---------
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
94.79
73%
-125
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
---------
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
---------
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
94.79
73%
-125
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
-----
N
--
A
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
--
G
G
--
A
--
R
-
P
-----
T
-----------
A
---------
A
C
C
S
S
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
----
D
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
--
P
N
---------
A
-
R
K
A
V
S
S
C
G
I
A
L
P
---------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
85.40
63%
-108
- C3 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
-----
Q
--
A
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
--
S
G
--
A
--
K
-
P
-----
S
-----------
G
---------
E
C
C
G
N
L
R
-----------
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
----
D
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
--
P
H
---------
A
-
R
D
T
L
T
S
C
G
L
A
V
P
---------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
72.53
28%
-100
- C3 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
---------------------------------------------------------------------------
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
--
N
PT
S
-
P
-----
S
-----------
Q
---------
P
C
C
T
A
L
Q
-----------
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
----
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
---------
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
69.72
27%
-97
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------------------------------AIDL
C
G
M
-----
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
--
S
--
K
E
NP
T
--
S
-
P
-----
S
-----------
Q
---------
P
C
C
T
A
L
Q
H
----------
A
-----------
D
-----
F
-
A
C
L
C
G
Y
K
N
----
S
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
--
E
L
---------
A
-
S
A
L
P
K
Q
C
G
L
A
N
A
P--------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
66.30
37%
-83
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------
S
C
-----
G
--
Q
V
A
S
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
-----
S
-----------
A
---------
G
C
C
S
G
V
R
-----------
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
----
N
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
--
G
N
---------
A
-
A
S
I
P
S
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
65.09
30%
-73
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[7-78]
---------------------------------------------------------------------------
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
--
K
G
--
G
--
V
-
V
-----
P
-----------
P
---------
S
C
C
T
G
V
K
-----------
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
----
A
G
-
A
------------
V
R
------
G
--------
I
N
P
--
N
N
---------
A
-
E
A
L
P
G
K
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
64.79
28%
-82
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
----------------------------------------------------------------
I
D
C
-----
G
H
V
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
P----
G
-
P
-----
S
-----------
G
---------
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
-----------
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
R
-
G
------------
I
H
-----
N
L
--------
N
-
E
--
D
N
---------
A
-
R
S
I
P
P
K
C
G
--
V
N
LP
Y
T
I
S
LNI
D
C
SRV----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
64.48
34%
-74
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
-----------------------------------------------------------------
T
C
-----
G
--
Q
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
--
G
G
--
G
--
A
-
V
-----
P
-----------
P
---------
A
C
C
N
G
I
R
-----------
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
----
Q
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
--
N
N
---------
A
-
A
A
L
P
G
K
C
G
V
S
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
64.39
33%
-69
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[7-78]
---------------------------------------------------------------------------
D
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
--
G
G
--
P
--
G
-
P
-----
S
-----------
G
---------
Q
C
C
D
G
V
K
-----------
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
----
A
R
-
G
------------
I
H
------
N
--------
L
N
E
--
D
N
---------
A
-
R
S
I
P
P
K
C
G
V
N
L
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
SP3
63.68
23%
-139
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
M
E
E
--
A
E
--
M
L
---
N
H
C
G
M
Y
L
--
M
KN
L
G
--
E
--
R
-
S
-----
Q
VSPR
M
R
E
E
D
H
K
Q
---------
L
C
C
M
Q
L
K
-----------
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
M
L
N
E
P
-
M
------------
W
I
-----
R
M
--------
R
D
Q
V
M
S
M
---------
A
-
H
N
L
P
I
E
C
N
L
M
S
Q
---------
P
C
QM-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
60.74
32%
-88
- C3 -
1T12
-
NLTP1_TOBAC
A:
[9-78]
----------------------------------------------------------------------------
S
--
N
L
---
A
P
C
L
A
Y
L
--
R
--
N
T
--
G
----
P
-----
L
-----------
G
---------
R
C
C
G
G
V
K
-----------
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
----
S
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
--
G
K
---------
A
-
A
G
L
P
S
T
C
G
V
N
I
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
SP3
59.62
32%
-73
* C3 *
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------A
I
S
C
-----
G
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
--
G
Q
--
G
--
S
G
P
-----
S
-----------
A
---------
G
C
C
S
G
V
R
-----------
S
-----------
L
-----
N
-
N
A
----
A
R
----
T
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
--
G
N
---------
A
-
A
S
I
P
S
K
C
G
V
S
I
P
YTISTST--
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.68
23%
-110
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
-------------------------------------------------------------------------------
D
L
---
S
I
C
L
N
I
L
GG
S
--
L
G
--
T
----------
V
-----------
D
---------
D
C
C
A
L
I
G
-----------
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
----
A
---------------
L
G
-----
I
---------
L
N
L
--
N
R
---------
N
L
Q
L
I
L
N
S
C
G
R
S
Y
P
---------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
51.01
17%
-83
- C3 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
-----
D
--
N
V
--
Q
V
---
P
G
L
D
P
A
A
--
F
--
K
G
-----
K
-
V
S
L
V
N
V
W
-----------
A
---------
S
W
C
V
P
C
H
-----------
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
----
D
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
--
D
N
---------
A
-
R
R
F
L
G
R
Y
G
N
P
F
G
---------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
50.30
8%
-104
- C3 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PRG
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
--
N
--
V
-
S
-----
L
-----------
H
---------
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
--
R
D
---------
E
-
R
N
V
I
R
A
A
S
N
S
C
K
---------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
47.44
16%
-77
- C3 -
2LSE
-
?
A:
[1-101]
----------------------------------------------------------------
M
Q
E
-----
E
--
R
K
--
K
L
---
L
E
K
L
E
K
I
--
L
--
D
E
--
V
--
T
-
D
-----
G
-----------
A
PDEA
R
E
R
I
E
K
L
A
K
D
V
K
-----------
D
-----------
E
LEEGD
A
-
K
N
M
I
E
K
F
R
----
D
E
-
M
------------
E
Q
-----
M
Y
--------
K
D
A
--
P
N
A
V
M
E
Q
L
L
E
E
I
-
E
K
L
L
K
K
A
G
S
L
V
P
---------
R
G
SYLEHHHHHH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
SP3
46.69
8%
-116
- C3 -
1TC3
-
TC3A_CAEEL
C:
[1-51]
-------------------------------------------------------------PRG
S
A
L
-----
S
--
D
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
--
L
L
--
N
--
V
-
S
-----
L
-----------
H
---------
E
M
S
R
K
I
S
-----------
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
----
D
P
-
V
-------------------
S
Y
--------
G
T
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
44.38
14%
-92
- C3 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
-----
T
--
A
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
--
T
A
--
G
--
Q
-
L
-----
A
-----------
V
---------
E
N
G
H
Y
V
V
-----------
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
----
N
G
-
E
------------
F
A
-----
A
L
--------
I
T
G
--
P
V
---------
H
-
K
G
V
I
N
D
A
G
I
P
F
T
---------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ASCNA
G
Q
L
T
V
C
A
S
A
M
LSGAAP
S
A
A
C
C
SNLKAQQG
C
L
C
Q
FAKNPA
Y
A
R
YVNSPNA
R
K
T
V
A
SCGVALPRC
40
94.04
100%
-131
- C- -
M040
-
A:
[1-101]
A
S
C
N
A
G
Q
L
T
V
C
A
S
A
M
L
S
G
A
A
P
S
A
A
C
C
S
N
L
K
A
Q
Q
G
C
L
C
Q
F
A
K
N
P
A
Y
A
R
Y
V
N
S
P
N
A
R
K
T
V
A
S
C
G
V
A
L
P
R
C
43
93.17
100%
-121
- C- -
M043
-
A:
[1-88]
A
S
C
N
A
G
Q
L
T
V
C
A
S
A
M
L
S
G
A
A
P
S
A
A
C
C
S
N
L
K
A
Q
Q
G
C
L
C
Q
F
A
K
N
P
A
Y
A
R
Y
V
N
S
P
N
A
R
K
T
V
A
S
C
G
V
A
L
P
R
C
42
89.43
100%
-112
- C- -
M042
-
A:
[1-88]
A
S
C
N
A
G
Q
L
T
V
C
A
S
A
M
L
S
G
A
A
P
S
A
A
C
C
S
N
L
K
A
Q
Q
G
C
L
C
Q
F
A
K
N
P
A
Y
A
R
Y
V
N
S
P
N
A
R
K
T
V
A
S
C
G
V
A
L
P
R
C