@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-05 )
AIGCNTVASKMAPCLPYVTGKGPLGGCCGGVKGLIDAARTTPDRQAVCNCLKTLAKSYSGINLGNAAGLPGKCGVSIPYQISPNTDCSKVH
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--10-........-------------------.----20---..---.----------------....---..30........-----------40........50--..---.-....-----.-------60--------.---------.----------.......--70........80--.........90--------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------AIGCNTVAS--K--MAPCLPYV-------------------T----G----KG---P----------------LGGC---CGGVKGLIDAAR-----------TTPDRQAVCNCL--KT---L-AKSY-----S-------G---------I---------N----------LGNAAGL--PGKCGVSIPYQ---ISPNTDCSKVH--------
10
HHSearch
97.79
65%
-142
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
T
S
--
N
--
L
A
P
C
L
A
Y
L
-------------------
R
----
N
----
T
G
---
P
----------------
L
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
--
K
S
---
A
-
A
G
A
I
-----
S
-------
G
---------
I
---------
N
----------
L
G
K
A
A
G
L
--
P
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T
C
G
V
N
I
P
Y
K
---
I
S
P
S
T
D
C
S
K
V
Q
--------
11
HHSearch
88.40
57%
-138
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
S
S
--
S
--
L
A
P
C
I
P
Y
V
-------------------
R
----
G
----
G
G
A--
V
----------------
P
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
--
K
Q
---
L
-
S
A
S
V
-----
P
-------
G
---------
V
---------
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
---
I
S
A
S
T
N
C
A
T
V
K
--------
15
HHSearch
86.67
52%
-127
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
D
S
--
L
--
V
R
P
C
L
S
Y
V
-------------------
Q
----
G
----
G
P
G--
P
----------------
S
G
Q
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
--
K
G
---
I
-
A
R
G
I
-----
H
-------
N
---------
L
---------
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
---
I
S
L
N
I
D
C
S
R
V
---------
28
SP3
85.89
61%
-125
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
--
I
A
P
C
I
S
Y
A
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----
G
----
Q
G
SG-
P
----------------
S
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
---
A
-
A
A
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
--------
12
HHSearch
81.76
62%
-123
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
A
S
--
A
--
I
A
P
C
I
S
Y
A
-------------------
R
----
G
----
Q
G
SG-
P
----------------
S
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
---
A
-
A
A
G
V
-----
S
-------
G
---------
L
---------
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
---
I
S
T
S
T
D
C
S
R
V
N
--------
14
HHSearch
81.45
46%
-131
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
Q
G
--
N
--
L
A
Q
C
I
G
F
L
-------------------
Q
----
K
----
G
G
V--
V
----------------
P
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
--
K
A
---
A
-
A
G
A
V
-----
R
-------
G
---------
I
---------
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
---
I
S
T
S
T
N
C
N
S
I
N
--------
22
HHSearch
55.74
27%
-150
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
P
S
C
R
W
Y
V
-------------------
T
S
R
TC
G
----
I
G
---
P
RLP
W
P
E
L
---------
K
R
R
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
--
S
I
---
L
-
M
D
G
A
-----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
------------------------
32
SP3
54.70
19%
-108
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
--
V
V
D
A
L
R
A
V
-------------------
R
----
N
----
A
A
---
P
----------------
D
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
---
R
-
A
P
T
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
24
HHSearch
53.15
27%
-128
- C3 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
--
L
R
A
C
Q
Q
W
I
-------------------
R
----
Q
QLA-
G
S
---
P
F
S
E
NQWGPQQGPS
L
--
R
E
Q
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
--
K
Q
---
A
-
A
K
S
V
-----
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
------------------------
31
SP3
50.96
19%
-109
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
A
A
A
G
S
--
V
V
D
A
L
R
A
V
-------------------
R
----
N
----
A
A
---
P
----------------
D
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
---
R
-
A
P
T
V
-----
M
L
E
S
S
G
--
G
---------
L
---------
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
------
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M
23
HHSearch
48.05
21%
-123
- C3 -
3OB4
-
?
A:
[429-485]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
--
Q
Q
---
I
-
M
E
N
Q
S
DRL-
Q
-------
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
------------------------
25
HHSearch
46.87
23%
-81
- C3 -
1PSY
-
2SS_RICCO
A:
[25-121]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
--
L
S
S
C
E
R
Y
L
-------------------
R
----
Q
S
S
S
R
R
S
T
GE
E
VLRMPGDENQQQESQQ
L
Q
Q
C
---
C
N
Q
V
K
Q
V
-------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
---
I
-
A
E
D
Q
-----
I
Q
Q
-----
G
Q--------
L
HGEE
S
E
R
--
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
---
R
Q
-----------------
21
HHSearch
46.40
19%
-134
* C3 *
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
--
L
D
S
C
R
W
Y
V
-------------------
S
T
R
T
C
G
----
V
G
---
P
RLA
T
Q
E
M
---------
K
A
R
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
--
R
I
---
L
-
M
D
G
V
-----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
H
-----------------------
16
HHSearch
45.22
23%
-100
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
Q
D
--
E
--
L
N
E
C
K
P
A
V
-------------------
S
----
K
----
E
N
PTS
P
----------------
S
Q
P
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
--
N
S
---
P
W
L
G
S
F
-------------
G
---------
V
---------
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-----------------------
27
HHSearch
44.88
18%
-129
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
--
L
N
H
C
G
M
Y
L
-------------------
M
----
K
NLGE
R
S
---
Q
VSPR
M
R
E
E
D
H------
K
Q
L
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
--
M
M
---
M
-
L
N
E
P
-----
M
W------
I
RMR
D
-----
Q
---------
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
--------------------------
33
SP3
39.79
20%
-85
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
--
N
A
G
--
Q
--
L
T
V
C
T
G
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I
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----
G
A
R--
P
----------------
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A
A
C
---
C
S
S
L
R
A
----------------------
Q
Q
G
C
F
C
Q
--
F
A
---
K
-
D
P
R
Y
-----
G
-------
R
Y--------
V
---------
N
----------
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
----------
T
C
H
-----------
3
Fugue
39.17
20%
-85
- C3 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
C
N
A
--
G
--
Q
--
L
T
V
C
T
G
A
I
-------------------
A
G---
G
----
A
R
---
P
----------------
T
A
A
C
---
C
S
S
L
R
A
Q
Q
G
C
F
C
-----------
Q
F
A
K
D
P
R
Y
G
R
Y
V
--
N
S
------------------------------------------------------
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
T
----------
C
H
-----------
2
Fugue
38.04
21%
-71
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
Q
D
--
E
--
L
N
E
C
K
P
A
V
-------------------
S
----
K
----
E
N
PTS
P
----------------
S
Q
P
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
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Y
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--
N
S
---
P
-
W
L
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-----
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-------
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---------
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----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
---------
P
T
C
------------
8
Fugue
34.08
12%
-66
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
D
--
R
VN
L
K
P
C
E
Q
H
I
M
Q
R
I
MGEQEQYDSYDIRST
R
----
S
----
S
D
---
Q
----------------
Q
Q
R
C
---
C
D
E
L
N
E
M
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N
T
Q
G
-----------
C
M
C
E
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E
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--
Q
C
DRL
Q
-
D
R
Q
M
-----
V
-------
Q
---------
Q
---------
F
----------
K
R
E
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M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
R
CDL
D
V
S
G
G
R
C
S
-----------
18
HHSearch
32.96
31%
-55
- C3 -
1N89
1
NLT2G_WHEAT
A:
[4-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
--
Q
--
L
A
V
C
A
S
A
I
-------------------
L
----
S
----
G
A
K--
P
----------------
S
G
E
C
---
C
G
N
L
R
A
----------------------
Q
Q
G
C
F
C
Q
YA
K
D
---
P
T
Y
G
Q
--------------
Y
---------
I
---------
R
----------
S
P
H
A
R
D
T
--
L
T
S
C
G
L
A
V
P
------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AIGCNTVASKMAPCLPYVTGKGPLGGCCGGVKGLIDAARTTPDRQAVCNCLKTLAKSYSGINLGNAAGLPGKCGVSIPYQISPNTDCSKVH
42
98.63
100%
-153
- C- -
M042
-
A:
[1-93]
A
I
G
C
N
T
V
A
S
K
M
A
P
C
L
P
Y
V
T
G
K
G
P
L
G
G
C
C
G
G
V
K
G
L
I
D
A
A
R
T
T
P
D
R
Q
A
V
C
N
C
L
K
T
L
A
K
S
Y
S
G
I
N
L
G
N
A
A
G
L
P
G
K
C
G
V
S
I
P
Y
Q
I
S
P
N
T
D
C
S
K
V
H
38
94.92
100%
-152
- C- -
M038
-
A:
[1-93]
A
I
G
C
N
T
V
A
S
K
M
A
P
C
L
P
Y
V
T
G
K
G
P
L
G
G
C
C
G
G
V
K
G
L
I
D
A
A
R
T
T
P
D
R
Q
A
V
C
N
C
L
K
T
L
A
K
S
Y
S
G
I
N
L
G
N
A
A
G
L
P
G
K
C
G
V
S
I
P
Y
Q
I
S
P
N
T
D
C
S
K
V
H
39
44.74
100%
-
- C- -
M039
-
A:
[1-93]
A
I
G
C
N
T
V
A
S
K
M
A
P
C
L
P
Y
V
T
G
K
G
P
L
G
G
C
C
G
G
V
K
G
L
I
D
A
A
R
T
T
P
D
R
Q
A
V
C
N
C
L
K
T
L
A
K
S
Y
S
G
I
N
L
G
N
A
A
G
L
P
G
K
C
G
V
S
I
P
Y
Q
I
S
P
N
T
D
C
S
K
V
H
43
44.71
100%
-
- C- -
M043
-
A:
[1-93]
A
I
G
C
N
T
V
A
S
K
M
A
P
C
L
P
Y
V
T
G
K
G
P
L
G
G
C
C
G
G
V
K
G
L
I
D
A
A
R
T
T
P
D
R
Q
A
V
C
N
C
L
K
T
L
A
K
S
Y
S
G
I
N
L
G
N
A
A
G
L
P
G
K
C
G
V
S
I
P
Y
Q
I
S
P
N
T
D
C
S
K
V
H