@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTTADRRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAIN
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------......--..--.---10......---------------------.------------.---20--.----.------------.-----------.-----------.---...---.30........40...-----------.....50....-...-.-------60------.----.----.----------......70-.........80........90.---------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------VDCGQV--NS--S---LASCIPFL---------------------T------------G---G---V----A------------S-----------P-----------S---ASC---CAGVQNLKTLAPTTAD-----------RRAACDCIKAA-AAR-F-------P-------T----I----K----------QDAASSL--PKKCGVDINIPISKTTNCQAIN---------
23
HHSearch
91.69
47%
-123
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
S
S
--
S
---
L
A
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P
Y
V
---------------------
R
------------
G
---
G
--------
G
------------
A
-----------
V
-----------
P
---
P
A
C
---
C
N
G
I
R
N
V
N
N
L
A
R
T
T
P
D
-----------
R
Q
A
A
C
N
C
L
K
Q
L
-
S
A
S
-
V
-------
P
-------
G
----
V
----
N
----------
P
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
N
C
A
T
V
K
---------
25
HHSearch
90.85
51%
-121
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
---
L
A
Q
C
I
G
F
L
---------------------
Q
------------
K
---
G
--------
G
------------
V
-----------
V
-----------
P
---
P
S
C
---
C
T
G
V
K
N
I
L
N
S
S
R
T
T
A
D
-----------
R
R
A
V
C
S
C
L
K
A
A
-
A
G
A
-
V
-------
R
-------
G
----
I
----
N
----------
P
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
N
C
N
S
I
N
---------
11
SP3
90.70
48%
-117
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
---
Q
---
G
----
S
------------
G
-----------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
-----------
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
----
L
----
N
----------
A
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
21
HHSearch
86.18
49%
-112
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-93]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
C
G
Q
V
--
A
S
--
A
---
I
A
P
C
I
S
Y
A
---------------------
R
------------
G
---
Q
---
G
----
S
------------
G
-----------
P
-----------
S
---
A
G
C
---
C
S
G
V
R
S
L
N
N
A
A
R
T
T
A
D
-----------
R
R
A
A
C
N
C
L
K
N
A
-
A
A
G
-
V
-------
S
-------
G
----
L
----
N
----------
A
G
N
A
A
S
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--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
D
C
S
R
V
N
---------
22
HHSearch
83.13
42%
-125
- C2 -
1T12
-
NLTP1_TOBAC
A:
[2-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
C
G
Q
V
--
T
S
--
N
---
L
A
P
C
L
A
Y
L
---------------------
R
------------
N
---
T
---
G
-----------------------------
P
-----------
L
---
G
R
C
---
C
G
G
V
K
A
L
V
N
S
A
R
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T
E
D
-----------
R
Q
I
A
C
T
C
L
K
S
A
-
A
G
A
-
I
-------
S
-------
G
----
I
----
N
----------
L
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
D
C
S
K
V
Q
---------
26
HHSearch
82.40
39%
-117
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
---
V
R
P
C
L
S
Y
V
---------------------
Q
------------
G
---
G
--------
P
------------
G
-----------
P
-----------
S
---
G
Q
C
---
C
D
G
V
K
N
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H
N
Q
A
R
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Q
S
D
-----------
R
Q
S
A
C
N
C
L
K
G
I
-
A
R
G
-
I
-------
H
-------
N
----
L
----
N
----------
E
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
D
C
S
R
V
----------
38
HHSearch
58.07
20%
-141
* C2 *
1HSS
-
IAA1_WHEAT
A:
[15-104]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
A
---
L
P
A
C
R
P
L
L
---------------------
R
------------
L
---
Q
C
N
G
S
----
Q
------------
V
-----------
P
E
A
V
--------
L
---
R
D
C
---
C
Q
Q
L
A
H
I
S
-------------------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
CR
R
E
V
----
V
----------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
----------------------
18
SP3
57.34
15%
-135
- C2 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
------------------------------------------------------------------------------------------------------------------------------------------------------------------MCYPGQA
F
Q
------
V
P
--
A
---
L
P
A
C
R
P
L
L
---------------------
R
------------
L
Q
C
N
G
---
S
----
Q
------------
V
-----------
P
-----------
E
A
V
L
R
D
C
---
C
Q
Q
L
A
H
I
--------
S
-----------
E
W
C
R
C
G
A
L
Y
S
M
-
L
D
S
-
M
Y
K
E
HGAF
P
-------
R
----
C
----
R
R
E
V
V
------
K
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
V
--
D
A
S
G
D
G
A
Y
V
C
K
D
V
A
A
YPDA
35
HHSearch
54.94
17%
-152
- C2 -
1BEA
-
ITRF_MAIZE
A:
[16-110]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
L
P
S
C
R
W
Y
V
---------------------
T
S
R
TC--------
G
---
I
---
G
----
P
------------
R
-----------
L
P
W
P
E
L
------
K
---
R
R
C
---
C
R
E
L
A
D
I
--------
P
-----------
A
Y
C
R
C
T
A
L
S
I
L
-
M
D
G
-
A
-------
I
P
P
G
PDAQ
L
E
G
R
-
L
----
E
D
LPGCP
R
E
V
Q
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
S
---------------------
10
Fugue
53.90
25%
-91
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EM
L
N
H
C
G
M
Y
L
---------------------
M
KNLGERSQVSPR
M
---
R
---
E
----
E
------------
D
-----------
H
-----------
K
---
Q
L
C
---
C
M
Q
L
K
N
L
--------
D
-----------
E
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
-------
M
-------
W
----
I
----
R
MR
D
Q
V
-----
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
-------
S
Q
P
C
Q
M
-----------
40
HHSearch
53.40
21%
-113
- C2 -
1S6D
-
2SS8_HELAN
A:
[19-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
M
---
L
N
H
C
G
M
Y
L
---------------------
M
------------
K
---
N
---
L
GERS
Q
VSPR
M
R
E
E
----
D
-----------
H
-----------
K
---
Q
L
C
---
C
M
Q
L
K
N
L
D
E
-------------------
K
C
M
C
P
A
I
M
M
M
-
L
N
E
-
P
-------
M
W------
I
RMR
D
Q
----
V
----------
M
S
M
A
H
N
L
--
P
I
E
C
N
L
M
------------------------
36
HHSearch
53.30
22%
-139
- C2 -
1SM7
-
?
A:
[13-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
H
---
L
R
A
C
Q
Q
W
I
---------------------
R
------------
Q
---
Q
LAG
S
----
P
F
S
E
NQWGPQQGP
S
-----------
L
-----------
R
---
E
Q
C
---
C
N
E
L
Y
Q
E
--------
D
-----------
Q
V
C
V
C
P
T
L
K
Q
A
-
A
K
S
-
V
-------
R
VQ-----
G
Q---
H
----
G
PFQST
R
I
---
Y
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
----------------------
32
HHSearch
50.89
23%
-100
- C2 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
---
L
S
S
C
E
R
Y
L
---------------------
R
------------
Q
---
S
S
S
R
R
----
S
T
GEEVLR-----
M
PGDENQQQESQ
Q
-----------
L
---
Q
Q
C
---
C
N
Q
V
K
Q
V
--------
R
-----------
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
D
-
Q
I
Q
Q
G
QL-
H
-------
G
----
E
E
S
E
R
V
----------
A
Q
R
A
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
------------------
2
Fugue
50.45
29%
-78
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------AI
D
L
C
G
M
S
--
Q
D
--
E
---
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E
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A
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E--
N
---
P
----
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-----------
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A
L
Q
H
--------
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A
C
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C
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Y
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P
-
W
L
G
-
S
-------
F
-------
G
----
V
----
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
------
A
N
A
P
T
C
-------------
6
Fugue
49.16
23%
-81
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------A
E
F
M
E
S
K
G
E
R
E
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C
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Q
E
VQ
R
K
--
D
---
L
S
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C
E
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Y
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S
S
R
R
S
T
GEEVLRMPGDEN
Q
------------
Q
---
Q
---
E
----
S
------------
Q
-----------
Q
-----------
L
---
Q
Q
C
---
C
N
Q
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V
--------
R
-----------
D
E
C
Q
C
E
A
I
K
Y
I
-
A
E
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-
Q
-------
I
-------
Q
----
Q
----
G
QLHGEE
S
E
R
V
A
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R
A
G
E
I
--
V
S
S
C
G
V
R
---
C
M
R
Q
T
R
T
N
-------------
27
HHSearch
48.45
30%
-95
- C2 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
---
L
N
E
C
K
P
A
V
---------------------
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------------
K
---
E
---
N
----
P
T-----------
S
-----------
P
-----------
S
---
Q
P
C
---
C
T
A
L
Q
H
A
--------
D
-----------
F
A
C
L
C
G
Y
K
N
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P
W
L
G
S
-
F
---------------
G
----
V
----
D
----------
P
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
---------------------
15
SP3
47.74
14%
-117
- C2 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
---------------------
R
--------------------
N
----
A
------------
A
-----------
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
E
K
P
E
L
I
L
LDNFA
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
----
L
----
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
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D
---
Y
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
39
HHSearch
47.67
14%
-98
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-114]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
N
---
L
K
P
C
E
Q
H
I
---------------------
M
------------
Q
---
R
I
MG
E
QEQ-
Y
------------
D
-----------
S
YDIRSTR
S
S
D
Q
Q
---
Q
R
C
---
C
D
E
L
N
E
M
E
-----
N
-
T
-----------
Q
G
C
M
C
E
A
L
Q
Q
I
-
M
E
N
-
Q
-------
C
DRLQ---
D
----
R
----
Q
MV
Q
Q
F
-----
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
----------------------
13
SP3
47.44
14%
-117
- C2 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
---
V
V
D
A
L
R
A
V
---------------------
R
--------------------
N
----
A
------------
A
-----------
P
-----------
D
---
L
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
E
K
P
E
L
I
L
LDNFA
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
-
A
P
T
-
V
M
L
E
S
S
--
G
-------
G
----
L
----
S
----------
L
Q
T
A
A
T
Y
---
A
E
T
G
V
D
---
Y
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M-
41
HHSearch
45.69
15%
-93
- C2 -
2LVF
-
?
A:
[16-101]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
--
M
---
L
S
H
C
R
M
Y
M
---------------------
R
------------
Q
Q
M
E
E
---
S
----
T
------------
Y
-----------
Q
TMPRRGMEP
H
-
M
---
S
E
C
---
C
E
Q
L
E
G
M
--------
D
-----------
E
S
C
R
C
E
G
L
R
M
M
-
M
R
M
M
Q
Q
K
EM
Q
P
-
R
-------
G
E
Q
M
R
R
----
M
----------
M
R
L
A
E
N
I
--
P
S
R
C
N
L
S
------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90.
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VDCGQVNSSLASCIPFLTGGVASPSASCCAGVQNLKTLAPTTADRRAACDCIKAAAARFPTIKQDAASSLPKKCGVDINIPISKTTNCQAIN
47
95.17
100%
-128
- C- -
M047
-
A:
[1-116]
V
D
C
G
Q
V
N
S
S
L
A
S
C
I
P
F
L
T
G
G
V
A
S
P
S
A
S
C
C
A
G
V
Q
N
L
K
T
L
A
P
T
T
A
D
R
R
A
A
C
D
C
I
K
A
A
A
A
R
F
P
T
I
K
Q
D
A
A
S
S
L
P
K
K
C
G
V
D
I
N
I
P
I
S
K
T
T
N
C
Q
A
I
N
42
94.30
100%
-130
- C- -
M042
-
A:
[1-110]
V
D
C
G
Q
V
N
S
S
L
A
S
C
I
P
F
L
T
G
G
V
A
S
P
S
A
S
C
C
A
G
V
Q
N
L
K
T
L
A
P
T
T
A
D
R
R
A
A
C
D
C
I
K
A
A
A
A
R
F
P
T
I
K
Q
D
A
A
S
S
L
P
K
K
C
G
V
D
I
N
I
P
I
S
K
T
T
N
C
Q
A
I
N
49
91.72
100%
-129
- C- -
M049
-
A:
[1-282]
V
D
C
G
Q
V
N
S
S
L
A
S
C
I
P
F
L
T
G
G
V
A
S
P
S
A
S
C
C
A
G
V
Q
N
L
K
T
L
A
P
T
T
A
D
R
R
A
A
C
D
C
I
K
A
A
A
A
R
F
P
T
I
K
Q
D
A
A
S
S
L
P
K
K
C
G
V
D
I
N
I
P
I
S
K
T
T
N
C
Q
A
I
N
48
90.69
100%
-131
- C- -
M048
-
A:
[1-282]
V
D
C
G
Q
V
N
S
S
L
A
S
C
I
P
F
L
T
G
G
V
A
S
P
S
A
S
C
C
A
G
V
Q
N
L
K
T
L
A
P
T
T
A
D
R
R
A
A
C
D
C
I
K
A
A
A
A
R
F
P
T
I
K
Q
D
A
A
S
S
L
P
K
K
C
G
V
D
I
N
I
P
I
S
K
T
T
N
C
Q
A
I
N