@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-06 )
ALGCGSVISYLSPCLPYVTNRGPLGGCCNGVKGLYGAARSTPDRQAACNCLKSLAATSGNINLSKAAGLPKQCNVNIPYQISPSTDCTKVR
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......------..---10........----20---.--------------.---.--------------.----------..--.---..30........-----------40........50....-----..-.-----.-------60--------.---------.----------.-----......--70.......--.80........90----------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALGCGSV------IS---YLSPCLPYVT----N----R--------------G---P--------------L----------GG--C---CNGVKGLYGAAR-----------STPDRQAACNCLKSLA-----AT-S-----G-------N---------I---------N----------L-----SKAAGL--PKQCNVNIP--YQISPSTDCTKVR----------------------
11
HHSearch
96.41
64%
-140
- C3 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
------
T
S
---
N
L
A
P
C
L
A
Y
L
R
----
N
----
T
--------------
G
---
P
--------------
L
----------
G
R
--
C
---
C
G
G
V
K
A
L
V
N
S
A
R
-----------
T
T
E
D
R
Q
I
A
C
T
C
L
K
S
A
A
-----
G
A
-
I
-----
S
-------
G
---------
I
---------
N
----------
L
-----
G
K
A
A
G
L
--
P
S
T
C
G
V
N
I
P
--
Y
K
I
S
P
S
T
D
C
S
K
V
Q
----------------------
32
SP3
82.51
51%
-126
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
------
A
S
---
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
--------------
G
SG-
P
--------------
S
----------
A
G
--
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
-----
A
G
-
V
-----
S
-------
G
---------
L
---------
N
----------
A
-----
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------------------
16
HHSearch
81.26
49%
-132
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
------
D
S
---
L
V
R
P
C
L
S
Y
V
Q
----
G
----
G
--------------
P
G--
P
--------------
S
----------
G
Q
--
C
---
C
D
G
V
K
N
L
H
N
Q
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
L
K
G
I
A
-----
R
G
-
I
-----
H
-------
N
---------
L
---------
N
----------
E
-----
D
N
A
R
S
I
--
P
P
K
C
G
V
N
L
P
--
Y
T
I
S
L
N
I
D
C
S
R
V
-----------------------
15
HHSearch
80.76
41%
-133
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
------
Q
G
---
N
L
A
Q
C
I
G
F
L
Q
----
K
----
G
--------------
G
V--
V
--------------
P
----------
P
S
--
C
---
C
T
G
V
K
N
I
L
N
S
S
R
-----------
T
T
A
D
R
R
A
V
C
S
C
L
K
A
A
A
-----
G
A
-
V
-----
R
-------
G
---------
I
---------
N
----------
P
-----
N
N
A
E
A
L
--
P
G
K
C
G
V
N
I
P
--
Y
K
I
S
T
S
T
N
C
N
S
I
N
----------------------
12
HHSearch
79.17
51%
-118
- C3 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
------
A
S
---
A
I
A
P
C
I
S
Y
A
R
----
G
----
Q
--------------
G
---
S
GP------------
S
----------
A
G
--
C
---
C
S
G
V
R
S
L
N
N
A
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
K
N
A
A
-----
A
G
-
V
-----
S
-------
G
---------
L
---------
N
----------
A
-----
G
N
A
A
S
I
--
P
S
K
C
G
V
S
I
P
--
Y
T
I
S
T
S
T
D
C
S
R
V
N
----------------------
13
HHSearch
77.90
52%
-135
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
------
S
S
---
S
L
A
P
C
I
P
Y
V
R
----
G
----
G
--------------
G
A--
V
--------------
P
----------
P
A
--
C
---
C
N
G
I
R
N
V
N
N
L
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
K
Q
L
S
-----
A
S
-
V
-----
P
-------
G
---------
V
---------
N
----------
P
-----
N
N
A
A
A
L
--
P
G
K
C
G
V
S
I
P
--
Y
K
I
S
A
S
T
N
C
A
T
V
K
----------------------
23
HHSearch
57.61
27%
-163
- C3 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
L
P
S
C
R
W
Y
V
T
S
R
TC
G
----
I
--------------
G
---
P
--------------
R
LP
W
P
E
L
K
---
R
R
--
C
---
C
R
E
L
A
D
I
-------------------
P
A
Y
C
R
C
T
A
L
S
I
L
M
-----
D
G
-
A
-----
I
P
P
G
PDAQ
L
E
G
R
------
L
---------
E
D
LPGCP
R
E
V
Q
R
-----
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
T
I
-------------------------------------
30
HHSearch
54.80
21%
-147
* C3 *
1HSS
-
IAA1_WHEAT
A:
[15-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
A
L
P
A
C
R
P
L
L
R
----
L
Q
C
--
N
--------------
G
---
S
--------------
Q
VP
E
A
V
L
----
R
D
--
C
---
C
Q
Q
L
A
H
I
-------------------
S
E
W
C
R
C
G
A
L
Y
S
M
L
-----
D
S
-
M
-----
Y
K
E
H---------------G--------
A
FPRCR
R
E
V
V
-
K
-----
L
T
A
A
S
I
--
T
A
V
C
R
L
P
I
V
--
V
----------------------------------
27
HHSearch
49.53
25%
-134
- C3 -
1S6D
-
2SS8_HELAN
A:
[19-97]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
---
M
L
N
H
C
G
M
Y
L
M
----
K
NLGE
R
--------------
S
---
Q
--------------
V
SPR
M
R
E
E
D
H
K
Q
L
--
C
---
C
M
Q
L
K
N
L
D
-------------------
E
K
C
M
C
P
A
I
M
M
M
L
-----
N
E
-
P
-----
M
W------
I
RMR
D
-----
Q
---------
V
----------
M
-----
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------------------------------------
25
HHSearch
49.30
27%
-115
- C3 -
1SM7
-
?
A:
[13-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
H
L
R
A
C
Q
Q
W
I
R
----
Q
QLA-
G
--------------
S
---
P
F
S
E
NQWGPQQGPS-
L
R
---------
E
Q
--
C
---
C
N
E
L
Y
Q
E
-------------------
D
Q
V
C
V
C
P
T
L
K
Q
A
A
-----
K
S
-
V
-----
R
VQ-----
G
Q--------
H
GPFQST
R
--
I
----------
Y
-----
Q
I
A
K
N
L
--
P
N
V
C
N
M
K
Q
I
-------------------------------------
21
HHSearch
48.17
19%
-129
- C3 -
1B1U
-
IAAT_ELECO
A:
[15-109]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
P
L
D
S
C
R
W
Y
V
S
----
T
R
T
CG
V
--------------
G
---
P
--------------
R
LA
T
Q
E
M
K
---
A
R
--
C
---
C
R
Q
L
E
A
I
-------------------
P
A
Y
C
R
C
E
A
V
R
I
L
M
-----
D
G
-
V
-----
V
T
PS----
G
Q
H
E
G
RLLQD
L
PGCP
R
Q
V
Q
R
A
----------
F
-----
A
P
K
L
V
T
--
E
V
E
C
N
L
A
T
I
--
H
----------------------------------
31
HHSearch
48.16
19%
-122
- C3 -
1W2Q
-
CONG_ARAHY
A:
[22-121]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
---
N
L
K
P
C
E
Q
H
I
M
----
Q
R
I
M-
G
--------------
E
QE-
Q
YDSYDIRSTR
S
S
D
Q
Q
----------
Q
R
--
C
---
C
D
E
L
N
E
M
E
----------------
N
-
T
Q
G
C
M
C
E
A
L
Q
Q
I
M
-----
E
N
-
Q
-----
C
DRLQ---
D
---------
R
---------
Q
----------
M
V
Q
Q
F
K
R
E
L
M
S
L
--
P
Q
Q
C
N
F
R
A
P
QR
C
D
L
D
V
------------------------------
28
HHSearch
48.11
23%
-108
- C3 -
2LVF
-
?
A:
[16-101]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
M
L
S
H
C
R
M
Y
M
R
----
Q
Q
M
E
E
S
--------------
T
Y--
Q
--------------
T
MPRRGMEP
H
M
S
E
--
C
---
C
E
Q
L
E
G
M
-------------------
D
E
S
C
R
C
E
G
L
R
M
M
M
-----
R
M
M
Q
-----
Q
K
EM----
Q
---------
P
R
G
E
Q
M
R
R
--
M
----------
M
-----
R
L
A
E
N
I
--
P
S
R
C
N
L
S
---------------------------------------
24
HHSearch
47.61
21%
-112
- C3 -
3OB4
-
?
A:
[429-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
--
C
---
C
N
E
L
N
E
F
E
-----------------
N
N
Q
R
C
M
C
E
A
L
Q
Q
I
M
-----
E
N
-
Q
-----
S
DRLQ---
G
---------
R
---------
Q
Q
E
Q
Q
F
-----
K
-----
R
E
L
R
N
L
--
P
Q
Q
C
G
L
R
A
P
-------------------------------------
10
Fugue
46.47
25%
-116
- C3 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
------
M
E
E
A
E
M
L
N
H
C
G
M
Y
L
M
----
K
----
N
LGERSQVSPR
M
R
E
E
D
---
H
--------------
K
----------
Q
L
--
C
---
C
M
Q
L
K
N
L
-------------------
D
E
K
C
M
C
P
A
I
M
M
M
L
N
EPMW
I
R
-
M
-----
R
-------
D
---------
Q
---------
V
----------
M
-----
S
M
A
H
N
L
--
P
I
E
C
N
L
M
---------
S
Q
P
C
Q
M
------------------------
34
SP3
45.95
20%
-84
- C3 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
------
A
A
A
G-
S
V
V
D
A
L
R
A
V
R
----
N
----
A
--------------
A
---
P
--------------
D
----------
L
P
--
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
-----
P
T
-
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
-----
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M--------------
36
SP3
44.44
20%
-84
- C3 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
------
A
A
A
G-
S
V
V
D
A
L
R
A
V
R
----
N
----
A
--------------
A
---
P
--------------
D
----------
L
P
--
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
D
S
R
A
-----
P
T
-
V
M
L
E
S
S
G
-------
G
---------
L
---------
S
----------
L
-----
Q
T
A
A
T
Y
---
A
E
T
G
V
D
Y
-----
L
A
V
G
A
L
T
H
S
V
R
VL
D
I
G
L
D
M--------------
8
Fugue
43.17
13%
-94
- C3 -
1BM9
-
RTP_BACSU
A:
[3-122]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
K
R
S
S
T
G
F
L
VK
Q
R
A
---
F
L
K
L
Y
M
I
T
M
T
----
E
----
Q
--------------
E
---
R
--------------
L
----------
Y
G
LK
L
---
L
E
V
L
R
S
E
F
K
E
I
G
-----------
F
K
P
N
H
T
E
V
Y
R
S
L
H
E
L
L
-----
D
D
-------
G
-------
I
---------
L
---------
K
----------
Q
-----
I
K
V
K
K
E
--
G
A
K
L
Q
E
V
V
L
--
Y
Q
F
K
D
Y
E
A
A
K
L
Y
K
K
Q
L
K
V
E
L
D
R
C
K
K
L
I
E
K
A
L
S
D
N
F
2
Fugue
40.89
27%
-80
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
------
Q
D
---
E
L
N
E
C
K
P
A
V
S
----
K
----
E
--------------
N
PTS
P
--------------
S
----------
Q
P
--
C
---
C
T
A
L
Q
-------------------
H
A
D
F
A
C
L
C
G
Y
K
N
S
P
W
-----
L
G
-
S
-----
F
-------
G
---------
V
---------
D
----------
P
-----
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--------
P
T
C
--------------------------
17
HHSearch
40.75
27%
-94
- C3 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
------
Q
D
---
E
L
N
E
C
K
P
A
V
S
----
K
----
E
--------------
N
PTS
P
--------------
S
----------
Q
P
--
C
---
C
T
A
L
Q
H
A
-------------------
D
F
A
C
L
C
G
Y
K
N
S
P
W
-----
L
G
-
S
-----
F
-------
G
---------
V
---------
D
----------
P
-----
E
L
A
S
A
L
--
P
K
Q
C
G
L
A
N
A
--
P
----------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
ALGCGSVISYLSPCLPYVTNRGPLGGCCNGVKGLYGAARSTPDRQAACNCLKSLAATSGNINLSKAAGLPKQCNVNIPYQISPSTDCTKVR
44
96.81
100%
-152
- C- -
M044
-
A:
[1-129]
A
L
G
C
G
S
V
I
S
Y
L
S
P
C
L
P
Y
V
T
N
R
G
P
L
G
G
C
C
N
G
V
K
G
L
Y
G
A
A
R
S
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
A
T
S
G
N
I
N
L
S
K
A
A
G
L
P
K
Q
C
N
V
N
I
P
Y
Q
I
S
P
S
T
D
C
T
K
V
R
45
95.41
100%
-149
- C- -
M045
-
A:
[1-129]
A
L
G
C
G
S
V
I
S
Y
L
S
P
C
L
P
Y
V
T
N
R
G
P
L
G
G
C
C
N
G
V
K
G
L
Y
G
A
A
R
S
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
A
T
S
G
N
I
N
L
S
K
A
A
G
L
P
K
Q
C
N
V
N
I
P
Y
Q
I
S
P
S
T
D
C
T
K
V
R
48
93.05
100%
-149
- C- -
M048
-
A:
[1-93]
A
L
G
C
G
S
V
I
S
Y
L
S
P
C
L
P
Y
V
T
N
R
G
P
L
G
G
C
C
N
G
V
K
G
L
Y
G
A
A
R
S
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
A
T
S
G
N
I
N
L
S
K
A
A
G
L
P
K
Q
C
N
V
N
I
P
Y
Q
I
S
P
S
T
D
C
T
K
V
R
46
90.25
100%
-136
- C- -
M046
-
A:
[1-97]
A
L
G
C
G
S
V
I
S
Y
L
S
P
C
L
P
Y
V
T
N
R
G
P
L
G
G
C
C
N
G
V
K
G
L
Y
G
A
A
R
S
T
P
D
R
Q
A
A
C
N
C
L
K
S
L
A
A
T
S
G
N
I
N
L
S
K
A
A
G
L
P
K
Q
C
N
V
N
I
P
Y
Q
I
S
P
S
T
D
C
T
K
V
R