@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 740_tII_VITVI: (2014-05-14 )
VTCSPQELSSCSAAFTSSAPPSSTCCSKLKEQKPCLCGYLKDPNFSQYVNSAKANRIASTCGVQFPNC
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------...--.--.--.--...10....--.-...--20-.-----........30-----------..-......40.------.-.------------..-----..--------.50...-.....60..-.-..-------..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------VTC--
S
--
P
--
Q
--
E
L
S
S
C
S
A
AF--T-SSA--P--P-----
S
S
T
C
C
S
K
L
K
E-----------QK-P
C
L
C
GYLKD------P-
N
------------
F
S
-----
Q
Y
--------
V
N
S
A
K
A
-
N
R
I
A
S
T
CGV-Q-FP-------NC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
92.70
38%
-97
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
92.70
38%
-97
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
------------------------------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
H-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
90.93
38%
-97
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
------------------------------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
F
A
K
D
------
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
S
P
N
A
-
R
K
A
V
S
S
C
G
I
-
A
-
L
P
-------
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
88.18
39%
-95
- C2 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-------------------------------------------------------------------------------------
A
C
--
Q
--
A
--
S
--
Q
L
A
V
C
A
S
A
I
--
L
-
S
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
Q
-
G
C
F
C
Q
Y
A
K
D
------
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
S
P
H
A
-
R
D
T
L
T
S
C
G
L
-
A
-
V
P
-------
H
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
83.12
33%
-82
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------------AI
D
L
C
GM
S
--
Q
--
D
--
E
L
N
E
C
K
P
A
V
--
S
-
K
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
F
-
A
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
81.93
31%
-96
- C2 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
--------------------------------------------------------------------------------------------
Q
--
D
--
E
L
N
E
C
K
P
A
V
--
S
-
K
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
D
F
A
C
L
C
G
Y
K
N
S
------
P
-
W
------------
L
G
-----
S
F
G-------
V
D
P
E
L
A
-
S
A
L
P
K
Q
C
G
L
-
A
-
N
A
P------
T
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
76.06
38%
-73
- C2 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-------------------------------------------------------------------------------------
T
C
--
G
--
Q
--
V
T
S
N
L
A
P
C
L
A
Y
L
--
R
-
N
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
I
-
A
C
T
C
--
L
K
S
------
A
-
A
-------------
G
-----
A
I
SG------
I
N
L
G
K
A
-
A
G
L
P
S
T
C
G
V
-
N
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
72.10
29%
-69
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
------------------------------------------------------------------------------------
I
T
C
--
G
--
Q
--
V
S
S
S
L
A
P
C
I
P
Y
V
--
R
-
G
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
A
-
A
C
N
C
--
L
K
Q
------
L
-
S
-------------
A
-----
S
V
PG------
V
N
P
N
N
A
-
A
A
L
P
G
K
C
G
V
-
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
67.87
23%
-52
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-----------------------------------------------------------------------------------A
I
S
C
--
G
Q
V
A
--
S
--
A
I
A
P
C
I
S
Y
A
--
R
-
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
N
-
N
A
----
A
R
T
------
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
YTISTST
D
C
SRVN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
67.68
30%
-70
- C2 -
1AFH
-
NLTP_MAIZE
A:
[2-80]
------------------------------------------------------------------------------------
I
S
C
--
G
--
Q
--
V
A
S
A
I
A
P
C
I
S
Y
A
--
R
-
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
A
-
A
C
N
C
--
L
K
N
------
A
-
A
-------------
A
-----
G
V
SG------
L
N
A
G
N
A
-
A
S
I
P
S
K
C
G
V
-
S
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
66.05
27%
-47
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[8-78]
-----------------------------------------------------------------------------------------------
S
--
L
V
R
P
C
L
S
Y
V
--
Q
-
G
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
S
-
A
C
N
C
L
K
G
I
A
------
R
-
G
------------
I
H
------
N
--------
L
N
E
D
N
A
-
R
S
I
P
P
K
C
G
V
-
N
-
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
64.72
23%
-44
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-78]
------------------------------------------------------------------------------------
M
T
C
--
G
--
Q
V
Q
G
--
N
L
A
Q
C
I
G
F
L
--
Q
-
K
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
A
-
V
C
S
C
L
K
A
A
A
------
G
-
A
------------
V
R
------
G
--------
I
N
P
N
N
A
-
E
A
L
P
G
K
C
G
V
-
N
-
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
64.71
25%
-108
- C2 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
--------------------------------------------------------------------------------------------------
D
L
S
I
C
L
N
I
L
GG
S
-
L
G
T
-----------
V
D
D
C
C
A
L
I
G
G
LG
D
I
E
------
A
I
-
V
C
L
C
I
Q
L
R
A
---------------------
L
G
-----
I
---------
L
N
L
N
R
N
L
Q
L
I
L
N
S
C
G
R
-
S
-
Y
P
-------
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
53.25
13%
-64
- C2 -
1U78
-
TC3A_CAEEL
A:
[2-104]
---------------------------------------------------------------------------------PRG
S
A
L
--
S
--
D
--
T
--
E
R
A
Q
-
L
D
V
M
--
K
-
L
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
R
-
H
C
I
R
V
Y
L
K
D
------
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
V
R
D
E
-
R
N
V
I
R
A
A
S
N
-
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
52.15
16%
-67
- C2 -
1KNG
-
CYCY_BRADU
A:
[50-193]
-----------------------------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
--
D
--
N
--
V
--
Q
V
P
G
L
D
P
A
A
--
F
-
K
G
---
K
--
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
D
-----------
E
A
-
P
L
L
T
E
L
G
K
D
------
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
A
D
N
A
-
R
R
F
L
G
R
Y
G
N
-
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
52.00
22%
-54
- C2 -
1ERV
-
?
?:
[1-105]
--------------------------------------------------------------------------------M
V
K
Q
I
E
---
S
--
K
--
T
--
A
F
Q
E
A
L
D
A
-----
A
G
D
--
K
--
L
V
V
V
D
F
S
A
T
W
C
G
P
C
K
M
-----------
I
K
-
P
F
F
H
S
L
S
E
K
Y
-----
S
-
N
------------
V
I
F
----
L
E
--------
V
D
V
D
D
C
-
Q
D
V
A
S
E
C
E
V
K
S
-
M
P
-------
T
F
Q
F
F
K
KGQKV
G
E
F
S
G
AN
K
E
K
L
E
A
T
I
N
E
L
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
47.68
14%
-68
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
----------------------------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
--
K
--
N
--
L
--
G
E
R
S
Q
V
S
P
R
--
M
-
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
N
L----------
D
E
-
K
C
M
C
P
A
I
M
M
M
L
N
EPM
W
-
I
------------
R
M
-----
R
D
--------
Q
V
M
S
M
A
-
H
N
L
P
I
E
C
N
L
-
M
-
S
Q
-------
P
C
QM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
46.18
11%
-56
* C2 *
1F9M
-
TRXF_SPIOL
A:
[10-121]
----------------------------------------------------------------------------MEAIVG
K
V
T
E
V
--
N
--
K
--
D
--
T
F
---
W
P
I
V
--
K
A
A
G
D
--
K
--
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
A
-----------
M
A
-
P
K
Y
E
K
L
A
E
E
Y
-----
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
C
N
Q
E
N
-
K
T
L
A
K
E
L
G
I
-
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
43.19
14%
-42
- C2 -
1XFL
-
TRXH1_ARATH
A:
[1-114]
---------------------------------------------------------------------------M
A
S
E
E
G
Q
V
I
A
C
H
--
T
--
V
--
E
--
T
W
N
E
Q
L
Q
K
A
--
N
-
E
S
K
--
T
--
L
V
V
V
D
F
T
A
S
W
C
G
P
C
R
F
-----------
I
A
-
P
F
F
A
D
L
A
K
K
L
-----
P
-
N
------------
V
L
-----
F
L
K
-------
V
D
T
D
E
L
-
K
S
V
A
S
D
W
A
I
Q
A
-
M
P
-------
T
F
M
F
L
K
EGKIL
D
K
V
V
G
AKK
D
E
L
Q
S
T
I
A
K
H
LA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
39.75
15%
-27
- C2 -
1M22
1
?
A:
[5-494]
PFPYAETD
V
A
D
L
Q
A
R
M
T
A
GELD
S
T
T
L
T
Q
A
Y
L
Q
R
I
A
A
LDRTGPRLRAVIELNPD
A
L
K
E
A
A
E
R
D
R
E
R
R
D
GRLRGPLHG
I
P
L
L
L
K
DN
I
N
A
--
A
--
P
--
M
--
A
T
S
A
G
S
L
A
L
--
Q
-
G
F
R
--
P
---
D
----
D
A
Y
L
V
R
R
L
R
D
-----------
A
G
-
A
V
V
L
G
K
T
N
L
------
S
-
E
------------
W
A
-----
N
F
--------
R
G
N
D
S
I
-
S
G
W
S
A
R
G
G
--
Q
-
T
R
-------
N
P
YRISHSPCGSS
S
G
S
A
V
A
V
A
A
NLAS
V
A
I
G
T
E
TDGSI
V
C
P
A
A
I
N
G
V
V
G
L
K
P
TVGLVSRDGIIPISFS
Q
D
T
A
G
P
M
A
RS
V
A
D
A
A
A
V
L
T
A
I
A
G
R
D
DAD
P
A
T
A
T
MPGRAVYDYTARLDPQGLRG
K
R
I
G
L
L
Q
T
PLLKYRGM
P
P
L
I
E
Q
A
A
T
E
L
R
R
A
G
A
V
V
V
P
V
E
L
P
NQGAW
A
E
A
E
R
T
L
L
L
Y
E
F
K
A
G
L
E
R
Y
F
N
T
H
RAPLRS
L
A
D
L
I
A
F
N
Q
A
H
SKQELGLFGQ
E
L
L
V
E
A
D
A
TAGLAD
P
A
Y
I
R
A
R
S
D
A
R
R
L
A
G
P
EG
I
D
A
A
L
A
A
HQLD
A
L
V
A
PTTGVAWPIRSDFPGES
Y
S
A
A
A
V
A
G
Y
P
S
L
T
V
PMGQIDG
L
P
V
G
L
L
F
M
G
T
A
WS
E
P
K
L
I
E
M
A
Y
A
Y
E
Q
R
T
RARRPPHFDT
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VTC
S
P
Q
E
L
S
S
C
S
A
AFTSSAPP
S
S
T
C
C
S
K
L
K
EQKP
C
L
C
GYLKDP
N
F
S
Q
Y
V
N
S
A
K
A
N
R
I
A
S
T
CGVQFPNC
42
93.56
100%
-106
- C- -
M042
-
A:
[1-101]
V
T
C
S
P
Q
E
L
S
S
C
S
A
A
F
T
S
S
A
P
P
S
S
T
C
C
S
K
L
K
E
Q
K
P
C
L
C
G
Y
L
K
D
P
N
F
S
Q
Y
V
N
S
A
K
A
N
R
I
A
S
T
C
G
V
Q
F
P
N
C