@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0057: (2016-03-11 )
MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGISGKSMNRPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAKYKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQILEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKLNNLIKTIEDNPDLTSVIRPSIQKYEKQLNDITNQINQLKNQQNEDKPLFDAKEISKLLQHIFHDIKHIEKSRLKALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYLTI
Atome Classification :
(20 SA)
--------------------------------.........10.....--..-.20........30..-----------......40---.-.-.......50----------------------------.......-.-60.........70...--.--.------------...80........90-------------.....---...100....-....---110..-----.--------.-------...--------120.---------......130.-...----...140.......150......---.-160.-.--------..-....170.......180.-------------------------......190.....--.----.200.......210..--------------------.....220....--...230.......240--.......250.......---------260.......270.......280.......290....-.----..300.......310.......320.......330.....-.-.-340.......350--.......360.......370.......380.......-390.......400..----.....410---.........420.......430.----......440.......450.......460..--------.....470.......480.......490.......500....-...510.......520--.......530.--......540-----
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------MQQLKTK
R
V
G
I
Y
V
R
V
S
--
T
E
-MQSTEGYSID
G
Q
I
N
Q
-----------
I
K
E
Y
CDF----H-
H
-
F
E
V
K
D
I
YAD----------------------------RGISGKS-M-
N
-
R
P
E
L
Q
R
I
L
K
D
A
KEG--
Y
--
I
------------
D
C
V
M
V
Y
KT
N
R
LAR
N
T
-------------
S
D
L
L
K
---
I
V
E
D
-
L
H
KQN-V
E
F
F---SL
S
E
R
-----
M
--------
E
-------VNT--------SS
G
K
---------
L
M
L
Q
I
L
A
S
F
S
-
E
F
E
----
R
N
N
I
V
E
N
V
FMGQTRRAQEGYYQ---G-NL-P-L--------GY-DKIPNSKH
E
L
M
INQHE
A
N
-------------------------
I
V
K
Y
I
F
E
S
Y
AKGH
G
--
Y
----
R
K
I
A
N
ALNHK
G
Y
VTKK--------------------GKP
F
S
I
S
S
I
T
Y
I
--LAN
P
F
Y
I
G
K
I
Q
F
AKYK--
D
W
S
E
K
R
RKGLNDKPVIA---------EGKHSPII
N
Q
D
L
W
D
K
V
Q
M
R
K
K
Q
VSQKPQVHGKG
T
N
L
L
-
T
----
G
I
IHCPQCGAPMAASNTTNTLKDGTK
K
R
I
R
Y
Y
SCSNFRNK-G-S-KVCSANS
V
R
A
D
V
I
--
E
D
Y
V
M
K
Q
I
L
E
I
V
KS
D
K
V
I
Q
R
V
V
T
HVNQENQVD
G
A
A
L
H
-
H
D
I
A
Y
K
Q
Q
QY
D
E
V
Q
I
----
K
L
N
N
L
I
-----
K
T
IEDNP
D
L
T
S
V
I
R
P
S
I
Q
K
Y
E
K
Q
----
L
N
D
I
T
N
Q
I
N
Q
L
KNQQNEDKPLF
D
A
K
E
I
S
K
L
L
--------
Q
H
I
F
H
D
I
K
H
I
E
K
S
R
L
K
A
L
Y
L
S
V
I
D
R
I
DIKKDGNH
K
K
Q
F
Y
V
T
L
-
K
L
N
N
E
I
I
K
Q
L
FNNKQL--
D
E
V
HLSTSSLF--L
P
Q
T
L
Y
L
TI-----
50
Fugue
74.36
20%
-69
- C3 -
4KIS
4
?
A:
[2-328]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
M
V
M
G
K
I
K
R
I
E
A
G
L
P
L
TTA
K
-
G
R
-
T
-
F
--------
G
Y
-
D
V
I
---
D
T
K
L
Y
I
N
E
E
E
A
K
-------------------------
Q
L
R
L
I
Y
D
I
F
E
E
E
Q
S
--
I
----
T
F
L
Q
K
R
L
K
K
L
G
F
-------------------------
K
V
R
T
Y
N
R
Y
N
N
W
--
L
T
N
D
L
Y
C
G
Y
V
S
Y
-----------------
K
D
K
V
H
V
---------
K
G
I
H
E
P
I
I
S
E
E
Q
F
Y
R
V
Q
E
I
F
S
R
M
G
K
N
P
N
M
N
K
E
S
A
S
L
L
-
N
----
N
L
V
V
C
S
K
C
G
L
G
-
F
V
H
R
R
K
D
T
V
S
R
G
K
K
Y
H
Y
R
Y
Y
S
C
K
T
Y
K
H
T
-
H
E
L
-
E
K
C
G
N
K
I
W
R
A
D
K
L
--
E
E
L
I
I
D
R
V
N
N
Y
S
F
A
S
R
N
I
D
K
E
D
E
S
L
N
E
-------------------
K
L
K
I
E
H
A
----
K
K
K
R
L
F
-----
D
L
Y
I
N
G
S
Y
E
V
S
E
L
D
S
M
M
N
D
I
D
A
Q
----
I
N
Y
Y
E
A
Q
I
E
A
N
E
E
L
K
K
N
K
T
V
D
F
N
S
L
E
F
R
E
K
Q
--------
L
Y
L
K
S
L
I
N
K
I
Y
I
D
G
---------
E
Q
V
T
I
E
W
L
L
E
H
H
H
H
H
H
-------------------------------------------------
28
HHSearch
72.34
28%
-89
- C1 -
2R0Q
1
BIN3_STAAU
C:
[1-200]
---------------------------------------
M
I
I
G
Y
A
R
V
S
--
S
L
-
D
Q
-----
N
L
E
R
Q
L
E
N
-----------
L
K
T
F
G
A
E
------------
K
I
F
T
E
-----------------------------
K
--------
N
-
R
P
I
L
Q
K
A
L
N
F
V
R
M
G
------------------
D
R
F
I
V
E
S
I
D
R
L
G
R
N
Y
-------------
N
E
V
I
H
---
T
V
N
Y
-
L
K
D
K
E
-
V
Q
L
M
---
I
T
S
L
P
-----
M
MNEVIGNP
L
-------
L
D
K
--------
F
M
K
D
---------
L
I
I
Q
I
L
A
M
V
S
-
E
Q
E
----
R
N
E
S
K
R
R
Q
A
Q
G
I
Q
V
A
K
E
K
G
V
Y
K
---
G
--
R
-
P
-
L
--------
L
Y
-
S
P
N
-------
A
K
D
P
Q
K
R
V
-------------------------
I
Y
H
R
V
V
E
M
L
E
E
G
Q
A
--
I
----
S
K
I
A
K
E
V
N
-------------------------------
I
T
R
Q
T
V
Y
R
I
--
K
H
D
N
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
58
Fugue
70.37
17%
-3
- C4 -
2BMF
-
?
A:
[169-618]
--------------------------------
M
A
S
I
E
D
N
P
--------------------
E
I
E
D
D
I
-----------------
F
R
K
----
K
-
R
-
L
T
I
M
D
L
H
---------------------------------
P
G
A
G
-
K
-
T
-
K
R
Y
L
P
A
I
V
R
E
A
I
K
R
--
G
--
L
------------
R
T
L
I
L
A
P
T
R
V
V
A
A
E
M
-------------
E
E
A
L
R
GLP
I
R
Y
Q
-
T
G
R
E
I
-
V
D
L
M
C
H
A
T
F
T
M
R
-----
L
L
S------
P
-------
I
R
V
--------
P
N
Y
N
---------
L
I
I
M
D
E
A
H
F
T
-
D
P
A
S
I
A
A
R
G
Y
I
S
T
R
V
E
M
G
E
A
----
A
G
I
F
M
---
T
-
A
T
-
P
-
P
--------
G
S
R
D
P
F
P
Q
S
N
A
P
I
M
D
E
E
R
E
---------------------------
I
P
E
R
S
W
N
S
--------------------
G
H
E
W
V
T
D
F
K
--------------------
G
K
-----
T
V
W
F
V
P
S
I
K
A
G
N
D
I
A
A
C
L
R
K
N
G
K
--
K
V
I
Q
L
S
R
K
T
F
D
S
E
Y
I
K
T
---------
R
T
N
D
--------
W
D
F
V
V
T
--------
T
D
I
S
E
M
G
A
N
F
K
A
E
----
R
V
I
D
P
R
R
C
M
K
P
V
I
L
T
D
G
E
E
R
V
I
L
A
G
P
M
P
V
T
H
S
S
A
A
Q
R
R
G
R
V
G
-
R
-
N
--------------------------
P
K
N
E
N
D
Q
Y
I
Y
M
G
E
P
L
E
N
D
E
D
C
A
------------
H
W
K
E
A
K
M
----
L
L
D
N
-
I
-----
N
T
P
E
G
-------
I
I
P
S
M
F
E
P
E
R
E
----
K
V
D
A
I
D
--
G
E
Y
R
L
R
G
E
A
R
K
T
F
V
D
L
M
R
R
G
D
L
P
--------
V
W
L
A
Y
R
V
A
A
E
G
I
N
Y
A
D
R
R
W
C
F
D
G
V
K
N
N
Q
I
L
E
E
N
V
E
V
E
I
W
-
T
K
-
E
G
E
R
K
K
L
K
P
R
W
L
D
A
R
I
YS
D
P
L
A
L
K
E
F
K
E
F
--
A
A
G
R
K
---------
33
HHSearch
69.92
41%
-70
- C1 -
3BVP
-
?
A:
[3-136]
--------------------------------------
K
K
V
A
I
Y
T
R
V
S
--
T
T
-
N
Q
A
E
E
G
F
S
I
D
E
Q
I
D
R
-----------
L
T
K
Y
A
E
A
----
M
-
G
-
W
Q
V
S
D
T
Y
T
D
----------------------------
A
G
F
S
G
A
K
-
L
-
E
-
R
P
A
M
Q
R
L
I
N
D
I
E
N
K
--
A
--
F
------------
D
T
V
L
V
Y
K
L
D
R
L
S
R
S
V
-------------
R
D
T
L
Y
---
L
V
K
D
V
F
T
K
N
K
-
I
D
F
I
---
S
L
N
E
S
-----
I
--------
D
-------
T
S
S
--------
A
M
G
S
---------
L
F
L
T
I
L
S
A
I
N
-
E
F
E
----
R
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
Fugue
68.70
17%
-12
* C4 *
4NL4
3
?
H:
[18-747]
SVAHVALPVPLPRTFDYLLPEGMAVKAGCRVR
V
P
F
G
K
Q
E
R
I
G
I
V
A
A
V
S
ER
S
E
-
L
P
L
D
E
L
K
P
V
A
E
A
L
D
D
EPVFSTTVWRL
L
M
W
A
A
E
Y
----
Y
-
H
-
H
P
I
G
D
V
L
F
H
ALPVMLRQGKPASATPLWYWFATEQGQV
V
D
L
N
G
L
K
-
R
-
S
-
R
K
Q
-
Q
Q
A
L
A
A
L
R
Q
G
--
K
--
I
WRHQVGELEFNE
A
A
L
Q
A
L
R
G
K
G
L
A
E
L
A
CEATDWRSAYSVA
G
E
R
L
R
---
L
N
T
E
-
Q
A
T
A
V
-
G
A
I
H
---
S
A
A
D
R
FSAWL
L
--------
A
-------
G
I
T
--------
G
S
G
K
TE-------
V
Y
L
S
V
L
E
N
V
L
-
A
Q
G
----
R
Q
A
L
V
M
V
P
E
I
G
L
T
P
Q
T
I
A
R
F
R
Q
---
R
F
N
A
-
P
-
V
--------
E
V
-
L
H
S
G
L
N
D
S
E
R
L
S
A
W
L
K
A
K
NGEAAIVIGTRSSLFTPFKDLGVIV
I
D
E
E
H
D
S
S
Y
K
Q
Q
E
G
--
W
RYHA
R
D
L
A
V
W
R
A
H
S
E
Q
I
-------------------------
P
I
I
L
G
S
A
T
P
A
--
L
E
T
L
H
N
V
R
Q
G
K
Y
R
Q
L
T
LS
K
P
A
Q
Q
H
V
L
D
L
K
G
Q
P
L
-----------
Q
A
G
L
S
P
A
L
I
S
R
M
R
Q
H
L
Q
-
A
D
N
Q
V
I
L
F
L
N
R
R
G
F
A
P
A
L
L
-
C
HDCG
W
I
A
E
C
P
R
C
D
S
Y
Y
T
L
H
Q
A
Q
H
--------
H
L
R
C
H
H
C
D
S
Q
R
P
I
-
P
-
R
-
Q
C
P
S
C
G
S
T
H
L
V
P
V
GI
G
T
E
Q
L
E
Q
A
L
A
P
L
F
P
E
V
P
I
S
R
I
D
R
H
L
A
A
V
H
R
G
G
A
R
I
L
I
G
T
Q
M
L
A
K
G
H
H
F
P
D
V
T
L
VSLL
D
V
D
G
A
L
FSADF
R
S
A
E
R
F
A
Q
L
Y
T
Q
V
S
G
R
A
G
R
A
G
K
Q
GEVI
L
Q
T
H
H
P
E
H
P
L
L
Q
T
L
L
Y
K
G
Y
D
A
F
A
E
Q
A
L
A
E
R
Q
TMQLPPWT
S
H
V
L
I
R
A
E
D
H
N
N
Q
Q
A
P
L
F
L
Q
Q
L
R
N
L
L
Q
A
S
P
L
A
D
E
K
L
W
V
L
G
P
V
P
A
L
R
W
Q
I
L
L
Q
H
P
S
R
V
R
L
--
Q
H
I
V
S
G
T
L
A
L
I
NT
L
P
E
A
W
V
L
D
V
DPIEG
1
PsiBlast_PDB
68.67
41%
-67
- C1 -
3BVP
-
?
A:
[3-134]
--------------------------------------
K
K
V
A
I
Y
T
R
V
S
--
T
T
-
N
Q
A
E
E
G
F
S
I
D
E
Q
I
D
R
-----------
L
T
K
Y
A
E
A
----
M
-
G
-
W
Q
V
S
D
T
Y
T
D
----------------------------
A
G
F
S
G
A
K
-
L
-
E
-
R
P
A
M
Q
R
L
I
N
D
I
E
N
K
--
A
--
F
------------
D
T
V
L
V
Y
K
L
D
R
L
S
R
S
V
-------------
R
D
T
L
Y
---
L
V
K
D
-
V
F
T
K
N
K
I
D
F
I
---
S
L
N
E
S
-----
I
--------
D
-------
T
S
S
--------
A
M
G
S
---------
L
F
L
T
I
L
S
A
I
N
-
E
F
E
----
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
68.35
28%
-61
- C1 -
2R0Q
1
BIN3_STAAU
C:
[5-186]
-------------------------------------------
Y
A
R
V
S
--
S
L
-
D
Q
N
L
E
----------------------
R
Q
L
E
N
L
----
K
-
T
-
F
G
A
E
K
I
F
T
E
----------------------------
K
---------
N
-
R
P
I
L
Q
K
A
L
N
F
V
R
M
G
------------------
D
R
F
I
V
E
S
I
D
R
L
G
R
N
Y
-------------
N
E
V
I
H
---
T
V
N
Y
-
L
K
D
K
E
-
V
Q
L
M
---
I
T
S
L
P
-----
M
----------------
M
N
E
--------
V
I
G
N
PLLDKFMKD
L
I
I
Q
I
L
A
M
V
S
-
E
Q
E
----
R
N
E
S
K
R
R
Q
A
Q
G
I
Q
V
A
K
E
K
G
V
Y
K
---
G
-
R
--
P
-
L
--------
L
Y
-
S
--
P
N
A
K
-----
D
P
Q
K
R
V
-------------------------
I
Y
H
R
V
V
E
M
L
E
E
G
Q
A
--
I
----
S
K
I
A
K
E
V
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
67.72
26%
-84
- C1 -
1GDT
3
TNR1_ECOLI
A:
[1-182]
--------------------------------------
M
R
L
F
G
Y
A
R
V
S
--
T
S
-
Q
Q
-----
S
L
D
I
Q
V
R
A
-----------
L
K
D
--------
A
-
G
-
V
K
A
N
R
I
F
T
D
-----------------------------
K
A
S
G
S
S
-
S
-
D
-
R
K
G
L
D
L
L
R
M
K
V
E
E
G
------------------
D
V
I
L
V
K
K
L
D
R
L
G
R
D
T
-------------
A
D
M
I
Q
---
L
I
K
E
-
F
D
A
Q
G
-
V
S
I
R
---
F
I
D
D
G
-----
I
--------
S
-------
T
D
G
--------
E
M
G
K
---------
M
V
V
T
I
L
S
A
V
A
-
Q
A
E
----
R
Q
R
I
L
E
R
T
N
E
G
R
Q
E
A
M
A
K
G
V
V
F
---
G
-
R
K
-
R
-----------------------
K
I
D
R
D
-------------------------------
A
V
L
N
M
W
Q
Q
G
L
G
--
A
----
S
H
I
S
K
T
M
N
-------------------------------
I
A
R
S
T
V
Y
K
V
--
I
N
E
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
54
Fugue
66.86
25%
-48
- C1 -
2R0Q
1
BIN3_STAAU
C:
[1-200]
--------------------------------------
M
I
I
G
-
Y
A
R
V
S
--
S
L
-
D
Q
N
-----
L
E
R
Q
L
E
N
-----------
L
K
T
F
------------
G
A
E
K
I
F
T
E
----------------------------
K
---------
N
-
R
P
I
L
Q
K
A
L
N
F
V
R
M
G
------------------
D
R
F
I
V
E
S
I
D
R
L
G
R
N
Y
-------------
N
E
V
I
H
---
T
V
N
Y
-
L
K
D
K
E
-
V
Q
L
M
---
I
T
S
L
P
-----
M
--------
M
-------
N
E
V
IGNPLLDK
F
M
K
D
---------
L
I
I
Q
I
L
A
M
V
S
-
E
Q
E
----
R
N
E
S
K
R
R
Q
A
Q
G
I
Q
V
A
K
E
K
G
V
Y
K
---
G
-
R
P
-
L
L
Y
--------
S
P
-
N
A
K
D
P
Q
K
R
V
I
Y
H
R
V
V
E
M
L
-------------------------
E
E
G
Q
A
I
S
K
I
A
K
E
V
N
IT
R
----
Q
T
V
Y
R
I
K
H
D
N
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
65.53
32%
-87
- C1 -
3GUV
-
?
A:
[7-155]
---------------------------------------
K
V
Y
L
Y
T
R
V
S
--
T
S
-
I
Q
-
I
E
G
Y
S
L
E
A
Q
K
S
R
-----------
M
K
A
F
A
I
Y
----
N
-
D
-
Y
E
I
V
G
E
Y
E
D
----------------------------
A
G
K
S
G
K
S
-
I
E
G
-
R
I
Q
F
N
R
M
M
E
D
I
K
S
G
KD
G
--
V
------------
S
F
V
L
V
F
K
L
S
R
F
A
R
N
A
-------------
A
D
V
L
S
---
T
L
Q
I
-
M
Q
D
Y
G
-
V
N
L
I
---
C
V
E
D
G
-----
I
--------
D
-------
S
S
K
--------
D
--
K
---------
L
M
I
S
V
L
S
A
V
A
-
E
I
E
----
R
E
N
I
R
I
Q
T
M
E
G
C
I
Q
K
A
R
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
65.20
32%
-81
- C1 -
3GUV
-
?
A:
[5-155]
-------------------------------------
K
I
K
V
Y
L
Y
T
R
V
S
--
T
S
-
I
Q
I
-
E
G
Y
S
L
E
A
Q
K
S
R
-----------
M
K
A
F
A
I
Y
----
N
-
D
-
Y
E
I
V
G
E
Y
E
D
----------------------------
A
G
K
S
G
K
S
I
E
-
G
-
R
I
Q
F
N
R
M
M
E
D
I
K
S
G
--
K
DG
V
------------
S
F
V
L
V
F
K
L
S
R
F
A
R
N
A
-------------
A
D
V
L
S
---
T
L
Q
I
-
M
Q
D
Y
G
-
V
N
L
I
---
C
V
E
D
G
-----
I
--------
D
-------
S
S
K
--------
D
--
K
---------
L
M
I
S
V
L
S
A
V
A
-
E
I
E
----
R
E
N
I
R
I
Q
T
M
E
G
C
I
Q
K
A
R
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
64.87
23%
-76
* C3 *
4KIS
2
?
A:
[2-212]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
M
V
M
G
K
I
K
R
I
E
A
G
---------
L
-
P
-
L
TTAKGRTF
G
Y
-
D
V
I
D
T
---
K
L
Y
I
N
E
E
E
A
K
-------------------------
Q
L
R
L
I
Y
D
I
F
E
E
E
Q
S
--
I
----
T
F
L
Q
K
R
L
K
K
L
G
F
-------------------------
K
V
R
T
Y
N
R
Y
N
N
W
--
L
T
N
D
L
Y
C
G
---
Y
V
S
Y
K
--
D
------------
K
V
H
V
---------
K
G
I
H
E
P
I
I
S
E
E
Q
F
Y
R
V
Q
E
I
F
S
R
M
G
K
N
P
N
M
N
K
E
S
A
S
L
L
-
N
----
N
L
V
V
C
S
K
C
G
L
G
F
-
V
H
R
R
K
D
T
V
S
R
G
K
K
Y
H
Y
R
Y
Y
S
C
K
T
Y
K
H
T
-
H
-
E
L
E
K
C
G
N
K
I
W
R
A
D
K
L
--
E
E
L
I
I
D
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
64.66
31%
-76
- C1 -
3G13
1
?
A:
[3-160]
-----------------------------------
L
E
R
L
R
V
A
A
Y
C
R
V
S
--
T
D
-
S
E
D
-
Q
L
N
S
Y
K
S
Q
V
Q
Y
-----------
Y
T
D
M
I
K
K
----
N
K
E
-
W
V
L
A
D
I
Y
A
D
----------------------------
E
A
------
T
-
K
-
R
E
D
F
Q
R
M
I
N
D
C
M
N
G
--
E
--
I
------------
D
M
V
F
T
K
S
I
S
R
F
A
R
N
T
-------------
L
D
T
L
K
---
Y
V
R
M
-
L
K
E
R
N
-
I
A
V
Y
---
F
E
D
E
K
-----
I
--------
N
-------
T
L
T
--------
M
D
G
E
---------
L
L
L
V
V
L
S
S
V
A
-
Q
Q
E
----
V
E
N
I
S
A
N
V
K
K
G
L
K
M
K
M
K
R
G
E
L
V
---
G
-
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
63.04
33%
-66
- C1 -
3G13
1
?
A:
[3-144]
-----------------------------------
L
E
R
L
R
V
A
A
Y
C
R
V
S
--
T
D
-
S
E
D
----
Q
L
N
S
Y
K
S
Q
-----------
V
Q
Y
Y
T
D
M
I
K
KN
K
-
E
-
W
V
L
A
D
I
Y
A
D
----------------------------
E
A
--------
T
K
R
E
D
F
Q
R
M
I
N
D
C
M
N
G
--
E
--
I
------------
D
M
V
F
T
K
S
I
S
R
F
A
R
N
T
-------------
L
D
T
L
K
---
Y
V
R
M
-
L
K
E
R
N
-
I
A
V
Y
---
F
E
D
E
K
-----
I
--------
N
-------
T
L
T
--------
M
D
G
E
---------
L
L
L
V
V
L
S
S
V
A
-
Q
Q
E
----
V
E
N
I
S
A
N
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
62.39
27%
-51
- C1 -
1ZR4
3
TNR1_ECOLI
A:
[6-141]
-------------------------------------------
Y
A
R
V
S
--
T
S
-
Q
Q
S
-----
L
D
I
Q
V
R
A
-----------
L
K
D
--------
A
-
G
-
V
K
A
N
R
I
F
T
D
----------------------------
K
A
-
S
G
S
S
-
S
-
D
-
R
K
G
L
D
L
L
R
M
K
V
K
E
G
------------------
D
V
I
L
V
K
K
L
D
R
L
G
R
D
T
-------------
A
D
M
I
Q
---
L
I
K
E
-
F
D
A
Q
G
-
V
S
I
R
---
F
I
D
D
G
-----
I
--------
S
-------
T
D
S
--------
Y
I
G
K
---------
M
V
V
T
I
L
S
A
V
A
-
Q
A
E
----
R
Q
R
I
L
Q
R
T
N
E
G
R
Q
E
A
M
A
K
G
V
V
F
---
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
61.66
32%
-45
- C1 -
3PKZ
3
BIN3_STAAU
A:
[1-124]
---------------------------------------
M
I
I
G
Y
A
R
V
S
--
S
L
-
D
Q
-----
N
L
E
R
Q
L
E
N
-----------
L
K
T
F
G
A
E
------------
K
I
F
T
E
-----------------------------
K
Q
S
G
K
S
I
E
-
N
-
R
P
I
L
Q
K
A
L
N
F
V
E
M
G
------------------
D
R
F
I
V
E
S
I
D
R
L
G
R
N
Y
-------------
N
E
V
I
H
---
T
V
N
Y
-
L
K
D
K
E
-
V
Q
L
M
---
I
T
S
L
P
-----
M
M-------
N
EVIGN
P
L
L
D
K
--------
F
M
K
D
---------
L
I
I
R
I
L
A
M
V
S
-
E
Q
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
59.93
26%
-43
- C1 -
3UJ3
-
GIN_BPMU
X:
[2-125]
----------------------------------------
L
I
G
Y
V
R
V
A
--
T
N
-
D
Q
-----
N
T
D
L
Q
R
N
A
-----------
L
V
C
A
---------
G
-
C
--
E
Q
I
F
E
D
-----------------------------
K
L
S
G
T
R
-
T
-
D
-
R
P
G
L
K
R
A
L
K
R
L
Q
K
G
------------------
D
T
L
V
V
W
K
L
D
R
L
G
R
S
M
-------------
K
H
L
I
S
---
L
V
G
E
-
L
R
E
R
G
-
I
N
F
R
---
S
L
T
D
S
-----
I
--------
D
-------
T
S
S
--------
P
M
G
R
---------
F
F
F
H
V
M
G
A
L
A
-
E
V
E
----
R
E
L
I
I
E
R
T
M
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
59.71
16%
-5
- C1 -
4BQQ
-
?
A:
[26-395]
------------------------------------
M
D
T
Y
A
G
A
Y
D
R
Q
S
--
R
E
R
S
A
A
S
P
A
T
Q
R
S
A
N
E
D
K
-----------
A
A
D
L
Q
R
E
----
V
-
E
R
D
G
G
R
F
R
F
V
G
----------------------------
H
F
S
E
A
P
G
-
A
-
E
-
R
P
E
F
E
R
I
L
N
E
C
R
A
G
--
R
--
L
------------
N
M
I
I
V
Y
D
V
S
R
F
S
R
L
K
-------------
V
M
D
A
I
---
P
I
V
S
E
L
L
A
L
G
-
V
T
I
V
---
S
T
Q
E
G
-----
V
--------
F
-------
R
Q
G
--------
N
V
M
D
---------
L
I
H
L
I
M
R
L
D
A
S
H
K
E
----
S
S
L
K
S
A
K
I
L
D
T
K
N
L
Q
R
E
L
G
G
Y
V
---
G
-
G
K
A
P
-
Y
--------
G
F
-
E
L
V
S
E
T
K
E
I
T
R
N
G
R
M
V
N
V
-------------------------
V
I
N
K
L
A
H
S
T
T
P
L
T
G
--
P
----
F
E
F
E
P
D
V
I
R
W
W
W
R
E
I
K
T
HKPGS
I
T
G
L
C
K
R
M
D
A
D
AVP
T
R
G
W
D
P
A
T
V
M
R
I
--
L
R
D
P
R
I
A
G
F
A
A
E
V
I
Y
K
--
K
K
P
D
G
T
P
T
T
K
I
E
G
Y
R
I
Q
RDPITLRPV
E
L
D
C
G
P
I
I
E
P
A
E
W
Y
E
L
Q
A
W
L
D
G
R
G
R
G
K
G
L
S
R
G
Q
A
I
L
S
-
A
----
M
D
K
L
Y
C
E
C
G
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
58.40
27%
-51
- C1 -
1ZR2
3
TNR1_ECOLI
A:
[6-141]
-------------------------------------------
Y
A
R
V
S
--
T
S
-
Q
Q
S
-----
L
D
I
Q
V
R
A
-----------
L
K
D
--------
A
-
G
-
V
K
A
N
R
I
F
T
D
----------------------------
K
A
-
S
G
S
S
-
S
-
D
-
R
K
G
L
D
L
L
R
M
K
V
K
E
G
------------------
D
V
I
L
V
K
K
L
D
R
L
G
R
D
T
-------------
A
D
M
I
Q
---
L
I
K
E
-
F
D
A
Q
G
-
V
S
I
R
---
F
I
D
D
G
-----
I
--------
S
-------
T
D
S
--------
Y
I
G
K
---------
M
V
V
T
I
L
S
A
V
A
-
Q
A
E
----
R
Q
R
I
L
Q
R
T
N
E
G
R
Q
E
A
M
A
K
G
V
V
F
---
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
58.31
27%
-60
- C1 -
1GDT
3
TNR1_ECOLI
A:
[6-137]
-------------------------------------------
Y
A
R
V
S
--
T
S
-
Q
Q
S
-----
L
D
I
Q
V
R
A
-----------
L
K
D
--------
A
-
G
-
V
K
A
N
R
I
F
T
D
----------------------------
K
A
-
S
G
S
S
-
S
-
D
-
R
K
G
L
D
L
L
R
M
K
V
E
E
G
------------------
D
V
I
L
V
K
K
L
D
R
L
G
R
D
T
-------------
A
D
M
I
Q
---
L
I
K
E
-
F
D
A
Q
G
-
V
S
I
R
---
F
I
D
D
G
-----
I
--------
S
-------
T
D
G
--------
E
M
G
K
---------
M
V
V
T
I
L
S
A
V
A
-
Q
A
E
----
R
Q
R
I
L
E
R
T
N
E
G
R
----
Q
E
A
M
A
K
---
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------