@TOME V2.3
(Nov 2016)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0633: (2016-03-17 )
MHEQDFRILEGQDITLPELGRELENITGHTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
Atome Classification :
(20 SA)
---------------------------------.........10........20........----30.---..-----.....40.-----...----....50..-......60........70.---------------.......80.---.......90.----.......-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------MHEQ
D
F
R
I
LEGQDI
T
L
P
E
L
G
R
E
L
E
N
ITGH----TIA---DS-----
T
G
E
I
K
R
V
I
-----
A
HL----PNFESDTD-
T
F
V
A
T
Y
R
LN
H
Q
Q
D
F
I
D
A
T
F
---------------
T
A
L
K
S
D
R
A
R
L
---
K
EVP
V
H
V
E
L
I
----
S
Y
I
SKSK-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
69.19
18%
-33
- C1 -
4UI9
-
APC5_HUMAN
O:
[27-756]
KDWVTPYKIAVLVLLSEMSRTGEGAVSLVERRR
L
N
Q
Q
L
L
P
L
L
Q
G
P
D
I
T
V
S
K
L
L
K
L
I
E
E
S
C
P
Q
----
L
A
N
---
S
V
-----
Q
I
R
I
K
L
M
A
EGELK
D
M
E
----
Q
F
F
D
D
L
S
D
-
S
F
S
G
T
E
P
E
V
H
K
T
S
V
V
G
L
F
L
---------------
R
H
M
I
L
A
Y
S
K
L
SFS
Q
V
F
K
L
Y
T
A
L
Q
----
Q
Y
F
Q
S
D
E
NKKPLSQKQAEFFLSQQASLLKNDETKALTPASLQKELNNLLKFNPDFAEAHYLSYLNNLRVQDVFSSTHSLLHYFDRLILTGAESKSNGEEGYGRSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCLSWLYVLGQKRSDSYVLLEHSVKKAVHFGLPYLASLGIQSLVQQRAFAGKTANKLMDALKDSDLLHWKHSLSELIDISIAQKTAIWRLYGRSTMALQQAQMLLSMNSLEQQNNTESFAVALCHLAELHAEQGCFAAASEVLKHLKERFPPNSQHAQLWMLCDQKIQFDRAMNDGKYHLADSLVTGITALNSIEGVYRKAVVLQAQNQMSEAHKLLQKLLVHCQKLKNTEMVISVLLSVAELYWRSSSPTIALPMLLQALALSKEYRLQYLASETVLNLAFAQLILGIPEQALSLLHMAIEPILADGAILDKGRAMFLVAKCQVASAASYDQPKKAEALEAAIENLNEAKNYFAKVDCKERIRDVVYFQARLYHTLGKTQERNRCAMLFRQLHQELPSVPLINHL
35
Fugue
67.75
17%
-7
- C4 -
2LSE
-
?
A:
[1-101]
---------------------------------
M
Q
E
E
R
K
K
L
L
E
K
L
E
K
I
L
D
E
V
T
D
G
A
P
D
E
A
R
E
----
R
I
E
---
K
L
-----
A
K
D
V
K
D
E
L
-----
E
---------
E
G
D
A
K
-
N
M
I
E
K
F
R
D
E
M
E
Q
M
Y
K
D
A
P
N
---------------
A
V
M
E
Q
L
L
E
E
I
---
E
K
L
L
K
K
A
G
S
L
VPRG
S
Y
L
E
H
H
H
HHH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
67.64
29%
-92
- C3 -
2RAL
-
SDRG_STAEP
A:
[346-397]
----------------------------------------------------------------------------------------------
I
----
P
K
I
K
D
N
S
G
-
E
I
I
A
T
G
T
Y
D
N
T
N
K
Q
I
T
Y
T
F
---------------
T
D
Y
V
D
K
Y
C
N
I
---
K
---
A
H
L
K
L
T
----
S
Y
I
D
K
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
65.12
27%
-99
- C3 -
1R17
1
SDRG_STAEP
A:
[91-142]
----------------------------------------------------------------------------------------------
I
----
P
K
I
K
D
N
S
G
-
E
I
I
A
T
G
T
Y
D
N
T
N
K
Q
I
T
Y
T
F
---------------
T
D
Y
V
D
---
K
Y
---
E
N
I
K
A
H
L
K
L
T
----
S
Y
I
D
K
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
63.03
34%
-21
- C5 -
1ECD
1
GLB3_CHITH
A:
[43-88]
----------------------------------------------------
G
K
D
L
E
S
I
K
G
T
----
A
P
F
---
E
T
H
A
N
R
I
V
G
F
F
S
K
I
I
-----
G
E
L
----
P
N
I
E
A
D
V
N
-
T
F
V
A
S
H
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
62.36
28%
-4
- C2 -
4O66
1
SMAL1_MOUSE
A:
[10-76]
----------------------------------------
F
L
R
G
A
C
I
K
T
---
G
D
R
F
R
V
K
I
G
Y
----
N
-------------
Q
E
L
I
A
V
F
-----
K
S
L
----
P
S
--
R
H
Y
D
-
S
F
T
K
T
W
D
F
S
---------------------------
M
S
D
Y
R
A
L
M
---
K
A
V
----
E
R
L
----
S
T
V
S
L
K
P
L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.07
34%
-18
- C5 -
1ECN
2
GLB3_CHITH
A:
[43-88]
----------------------------------------------------
G
K
D
L
E
S
I
K
G
T
----
A
P
F
---
E
T
H
A
N
R
I
V
G
F
F
S
K
I
I
-----
G
E
L
----
P
N
I
E
A
D
V
N
-
T
F
V
A
S
H
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
61.36
34%
-18
- C5 -
1ECA
1
GLB3_CHITH
A:
[43-88]
----------------------------------------------------
G
K
D
L
E
S
I
K
G
T
----
A
P
F
---
E
T
H
A
N
R
I
V
G
F
F
S
K
I
I
-----
G
E
L
----
P
N
I
E
A
D
V
N
-
T
F
V
A
S
H
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.31
34%
-20
- C5 -
1ECO
2
GLB3_CHITH
A:
[43-88]
----------------------------------------------------
G
K
D
L
E
S
I
K
G
T
----
A
P
F
---
E
T
H
A
N
R
I
V
G
F
F
S
K
I
I
-----
G
E
L
----
P
N
I
E
A
D
V
N
-
T
F
V
A
S
H
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
56.95
10%
-34
- C4 -
2JX0
-
GIT1_RAT
A:
[640-770]
-----------------------LDGDPDPGLP
S
T
E
D
V
I
L
K
T
E
Q
V
T
K
N
I
Q
E
L
L
R
A
A
Q
E
F
K
H
D
----
S
F
V
---
P
C
-----
S
E
K
I
H
L
A
V
-----
T
E
M
A
S
L
F
P
K
R
P
A
L
E
P
-
V
R
S
S
L
R
L
L
N
A
S
A
Y
R
L
Q
S
E
C
R
K
TVPPEPGAPVD
F
Q
L
L
T
Q
Q
V
I
Q
C
A
---
Y
D
I
A
K
A
A
K
Q
L
----
V
T
I
T
T
R
E
KKQ--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.32
31%
-16
- C3 -
3UVF
3
?
A:
[116-174]
------------------------------------------------
L
P
E
Y
A
R
S
N
E
S
I
N
S
-------
V
---
D
S
-----
I
I
N
T
S
Y
F
S
-----
A
W
L
----
V
G
F
I
E
A
E
G
-
C
F
-
S
T
Y
K
L
N
K
D
D
D
Y
L
I
A
S
F
---------------
D
I
A
Q
K
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.75
27%
-94
- C3 -
1R19
-
SDRG_STAEP
A:
[346-405]
----------------------------------------------------------------------------------------------
I
----
P
K
I
K
---
G
-
E
I
I
A
T
G
T
Y
D
N
T
N
K
Q
I
T
Y
T
----------------
T
D
Y
V
D
---------
N
I
K
A
H
L
K
L
T
----
S
Y
I
D
K
S
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
48.87
29%
-51
* C3 *
2KVO
-
PSB28_SYNY3
A:
[46-87]
-------------------------------------------------------
T
D
D
I
T
G
M
----
Y
L
I
---
D
D
-----
E
G
E
I
I
T
R
E
-----
V
K
G
----
K
F
I
N
G
R
P
T
-
A
I
E
A
T
V
I
L
N
S
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
Fugue
48.73
11%
-19
* C4 *
2LF0
-
?
A:
[1-120]
---------------------------------
M
K
E
V
E
K
N
E
I
K
R
L
S
D
R
L
D
A
I
R
H
Q
Q
A
D
L
S
L
V
EAAD
K
Y
A
---
E
L
-----
E
K
E
K
A
T
L
E
-----
A
E
I
----
A
R
L
R
E
V
H
S
Q
K
L
S
K
E
A
Q
K
L
M
K
M
P
F
Q
R
A
I
T
---------------
K
K
E
Q
A
D
M
G
K
L
---
K
K
S
V
R
G
L
V
V
V
----
H
P
M
T
A
L
G
R
E
M
GLEEMTGFSKTTF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
48.22
25%
20
- C5 -
2R6J
-
EGS1_OCIBA
A:
[214-256]
---------------------------------------
Y
R
P
S
T
N
I
I
T
Q
L
E
L
I
S
R
W
E
K
K
I
G
K
----
K
F
K
K
I
H
V
P
-----
E
E
E
I
V
A
L
T
-----
K
E
L
----
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
42.58
6%
-44
- C4 -
4GIP
1
FUS_SV5
A:
[1-81]
---------------------------------
L
D
P
A
A
L
M
----------
Q
I
G
V
I
P
T
N
V
R
Q
L
----
M
Y
Y
---
T
E
-----
A
S
S
A
F
I
V
V
-----
K
L
M
----
P
T
I
D
S
P
I
S
-
G
-
C
N
I
T
S
I
S
S
Y
N
A
T
V
T
K
L
L
---------------
Q
P
I
G
E
N
L
E
T
I
---
R
N
Q
L
I
P
-----------
T
R
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
42.17
36%
-4
- C5 -
2DWF
-
A:
[7-20]
---------------------------------------------------------------------------------
L
I
K
R
I
Q
-----
A
M
I
----
P
K
G
G
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
36.59
21%
7
- C5 -
2JL1
1
?
A:
[194-221]
------------------------------------
K
T
Y
N
L
V
S
N
Q
P
W
T
F
D
E
L
A
Q
I
L
S
E
V
S
G
K
----
K
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
35.58
21%
25
- C5 -
2PZM
2
?
A:
[239-267]
------------------------------------
G
V
F
N
V
S
T
G
E
G
H
S
I
K
E
V
F
D
V
V
L
D
Y
V
G
A
----
T
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
35.33
21%
18
- C5 -
2ZCU
-
QOR2_ECOLI
A:
[190-218]
------------------------------------
K
V
Y
E
L
A
G
D
S
A
W
T
L
T
Q
L
A
A
E
L
T
K
Q
S
G
K
----
Q
V
T
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------