@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA2206: (2016-04-02 )
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYYNTYYKYKGAIDQTVLTVLGSGSKSYIQPLKVDDKNGYLAKSYAQVRNYVTESINTGKVLYTFYQNPTLVKTAIKAQETASSIKNTLSNLLSFWK
Atome Classification :
(20 SA)
--.........10.--.......20........30........40........50.....-...60........70........-----------------80........90-.......--..-100-........110.......120.......130.......140.......150.......160.......170.......180.......190.......200.......210.......220.......230.......240.......250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360...---....370.......380.......390.......400.......410.......420.......430....
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--MK
N
K
Y
I
S
K
L
L
V
G--A
A
T
I
T
L
A
T
M
ISNGEAKASENTQQTSTKHQTTQNNYV
T
D
Q
Q
K
A
F
Y
-
Q
V
L
H
LKGI
T
E
E
Q
R
N
Q
Y
I
K
T
L
R
EH-----------------
P
E
R
A
Q
E
V
F
S
E
S
--
L
KDSKNP--
D
R
-
R
V
--
A
Q
Q
N
A
F
Y
N
VLKNDNLT
E
Q
E
KN
N
Y
I
A
Q
IKENPD
R
S
Q
Q
V
W
V
E
S
V
Q
S
S
K
A
K
E
R
QN
I
E
N
A
D
K
A
I
K
D
FQDNKAPHDKSAAYEANSKL
P
K
D
L
R
DKNN
R
F
V
E
K
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
KLNEKDSI
E
N
R
R
L
A
Q
R
E
VNKAPM
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
QKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEV
P
Q
S
K
L
L
G
Y
Y
Q
S
L
K
DSFNY
G
Y
K
Y
L
T
D
T
Y
K
S
Y
K
E
KYDTA
K
Y
Y
Y
N
T
Y
Y
K
YKGA
I
D
Q
T
V
L
T
V
LGSGSK---S
Y
I
Q
P
L
K
VDDKNG
Y
L
A
K
S
Y
A
Q
V
R
N
Y
V
T
ESINT
G
K
V
L
Y
T
FYQNP
T
L
V
K
T
A
I
K
A
Q
E
T
A
S
S
I
K
N
T
L
S
N
L
L
S
FWK
66
Fugue
65.75
14%
22
- C1 -
4USR
2
?
A:
[1-357]
GP
A
M
P
P
I
L
D
V
I
V
I
G
GG
Q
A
A
L
T
T
A
Y
F
L
R
-----------------
R
T
S
L
S
Y
L
L
L
D
E
Q
P
G
P
G
G
A
W
L
H
-----------
A
W
D
S
L
R
L
F
S----------------
P
A
A
W
S
S
I
A
G
W
P
--
M
P
S
P
T
E
P
--
G
N
P
T
R
--
N
D
V
I
D
Y
L
R
R
Y
E
D
R
Y
Q
F
P
I
Q
R
P
V
R
V
D
T
V
T
R
L
D
D
----
L
W
R
V
Q
A
G
D
Q
Q
W
L
A
R
A
V
I
S
A
T
G
T
W
S
K
P
F
I
P
---
P
Y
E
G
R
E
L
F
Q
G
A
Q
I
H
S
A
H
Y
R
T
P
-----
A
P
F
A
G
K
R
V
M
V
V
G
G
G
--
N
S
G
A
Q
V
L
A
E
L
S
S
V
S
----------
E
T
L
W
I
T
Q
E
P
P
A
F
L
P
D
E
V
D
G
R
V
L
F
E
R
A
T
A
R
W
K
A
Q
Q
E
G
R
S
I
D
E
P
A
G
G
F
G
D
I
--------
V
M
V
P
P
V
R
E
A
R
E
R
G
V
L
V
A
E
R
P
F
A
R
F
T
E
T
G
V
E
W
A
D
G
R
R
E
N
L
D
------------------------
A
V
I
W
C
S
G
F
R
PAL
D
H
L
R
E
L
G
V
V
E
A
D
G
K
V
Q
V
E
D
T
R
V
V
K
-
Q
P
N
L
W
L
V
G
Y
G
D
W
T
G
M
A
S
A
T
L
I
G
V
T
R
T
A
R
S
T
A
D
Q
V
V
Q
A
L
T
A
T
P
----
5
PsiBlast_PDB
64.59
34%
-4
- C2 -
4NPF
-
Y:
[3-106]
------------------------------------------------
N
K
F
N
K
E
Q
Q
N
A
W
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
KK
L
N
D
A
Q
A
P
KA
D
N
-
K
F
NK
E
Q
Q
N
A
W
Y
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
P
S
Q
S
A
N
L
L
A
E
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
HHSearch
63.40
100%
43
- C2 -
2WY7
1
?
Q:
[12-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
63.40
100%
43
- C2 -
2WY7
1
?
Q:
[12-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.57
100%
28
- C2 -
2JVH
-
SBI_STAAM
A:
[198-266]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
K
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.34
100%
40
- C2 -
2WY8
-
?
Q:
[12-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.09
100%
27
- C2 -
2JVG
-
SBI_STAAM
A:
[198-266]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
K
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
62
Fugue
61.79
95%
30
- C2 -
2JVG
-
SBI_STAAM
A:
[195-266]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
A
M
V
S
I
E
K
A
I
V
R
H
D
E
R
V
K
S
A
N
D
A
I
S
K
L
N
E
K
D
S
I
E
N
R
R
L
A
Q
R
E
V
N
K
A
P
M
D
V
K
E
H
L
Q
K
Q
L
D
A
L
V
A
Q
K
D
A
E
K
K
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
57.77
39%
10
- C2 -
4IOI
-
H:
[4-49]
--------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
-
E
I
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
T
N
V
L
G
E
A
--
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
56.77
39%
13
- C2 -
4HJG
-
H:
[4-49]
--------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
-
E
I
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
T
N
V
L
G
E
A
--
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
56.22
39%
8
- C2 -
4HKZ
-
H:
[3-48]
--------------------------------------------------
Y
N
K
D
Q
Q
S
A
F
Y
-
E
I
L
N
M
P
N
L
N
E
A
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
T
N
V
L
G
E
A
--
K
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
55.20
40%
34
- C2 -
1EDJ
-
SPA_STAAU
A:
[7-55]
------------------------------------------------------
Q
Q
N
A
F
Y
-
Q
V
L
N
M
P
N
L
N
A
D
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
V
L
G
E
A
Q
K
L
N
D
S
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
53.78
38%
30
- C2 -
1Q2N
-
A:
[3-57]
------------------------------------------------
N
K
F
N
K
E
Q
Q
N
A
F
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
52.02
36%
26
- C2 -
1SS1
-
A:
[1-58]
---------------------------------------------
T
A
D
N
K
F
N
K
E
Q
Q
N
A
F
W
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
51.79
40%
32
- C2 -
1EDI
-
SPA_STAAU
A:
[7-55]
------------------------------------------------------
Q
Q
N
A
F
Y
-
Q
V
L
N
M
P
N
L
N
A
D
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
V
L
G
E
A
Q
K
L
N
D
S
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.69
38%
46
- C2 -
1LP1
4
B:
[4-57]
-------------------------------------------------
K
F
N
K
E
Q
Q
N
A
F
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
HHSearch
51.41
35%
18
- C2 -
2LR2
-
?
A:
[17-82]
-------------------------------------------------
K
F
N
K
E
Q
Q
N
A
F
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
A
F
I
Q
S
L
K
D
D
SYIDTNNDGAYEGDELS
G
S
Q
S
A
N
L
L
A
E
A
--
K
K
L
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
51.27
37%
36
- C2 -
1BDD
-
A:
[1-58]
---------------------------------------------
T
A
D
N
K
F
N
K
E
Q
Q
N
A
F
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
49.63
36%
28
- C2 -
2JWD
-
A:
[4-58]
------------------------------------------------
N
K
F
N
K
E
Q
Q
N
A
F
W
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
49.27
37%
31
- C2 -
1BDC
-
A:
[1-58]
---------------------------------------------
T
A
D
N
K
F
N
K
E
Q
Q
N
A
F
Y
-
E
I
L
H
L
P
N
L
N
E
E
Q
R
N
G
F
I
Q
S
L
K
D
D
-----------------
P
S
Q
S
A
N
L
L
A
E
A
K
K
L
N
D
A
Q
A
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------