@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1123: (2016-03-21 )
MEFKHEVENNFANIIQEYRFNLIKVNEDEIMLLNPNYALTIWKSREGIDIYYLFLHSLEKVKITNFLFSNYEKDLLANITPANNLTDQISNSLLIHARGLSKYFPELLSGQNDWVKEFKENKFYNEPRAINKDEYSAYQTIIKNINGKKIEGFQNEI
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20..--......30........40........50...-----.....60........70........80......--...90.-.......100......-.110........120.......130.....-..140.......150.....---------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME
F
K
H
E
V
E
N
N
F
A
N
I
I
Q
E
YRF
N
L
I
--
K
VNED
E
I
M
L
LNP
N
Y
A
L
T
I
W
KSREG
I
D
I
Y
Y
L
F
-----
L
H
S
L
E
K
V
K
I
T
N
F
L
F
S
NY
E
K
D
L
L
ANIT-PAN
N
L
T
--
D
Q
ISN
S
-
L
L
I
H
AR
G
L
S
K
Y
F
P
E
L
L-SG-
Q
N
D
W
V
K
E
F
K
ENKFYNEPRAI
N
K
D
E
Y
S
A
-
Y
Q
T
I
I
K
NINGKKIEGFQNEI---------------------------------------------------------------------------------------------
109
Fugue
73.03
23%
-39
- C1 -
2X3H
6
?
A:
[44-541]
PKTEGILHKGQS
L
Y
E
Y
L
D
A
RVLTSKPFGAAGDATTDD
T
E
V
I
A
A
S
L
N
SQ
K
A
V
T
I
S
D
G
V
F
S
S
S
G
INSN
Y
C
N
L
D
GRGSGVLSHRSSTGN
Y
L
V
F
N
NPR
T
G
R
L
SN
I
T
V
E
S
N
K
ATDT
T
Q
G
Q
QVSLAGGSD
V
T
V
S
D
V
N
F
S
NVKGTGFS
L
I
A
Y
P
NDAPPDG
L
M
I
K
G
I
R
G
S
Y
S
GYATNKAAGC
V
L
A
D
SSVN
S
L
I
D
N
V
I
A
K
NYPQFGA
V
E
L
K
G
TASY
N
I
V
S
N
V
I
G
A
DCQHV
T
Y
N
G
T
EGPIAPSN
N
L
I
K
GVMANNPKYAAVVAGKGST
N
L
I
S
D
V
L
V
D
YSTSDARQAHGVTVEGSD
N
V
I
N
N
V
L
M
S
GCDGTNSLG
Q
R
Q
T
A
T
I
A
R
F
I
G
T
A
N
N
N
Y
A
S
V
F
P
S
Y
---------------------------
S
A
T
G
V
-
I
T
F
E
S
-----
G
S
T
R
N
F
V
E
V
K
H
P
G
R
R
N
---
D
L
L
S
S
A
S
-
T
I
D
G
A
A
TI
D
G
T
S
N
S
-
N
V
V
H
A
P
A
L
G
Q
Y
I
G
S
M
--
S
G
-
R
F
E
W
R
I
-----
K
S
M
S
L
P
S
G
V
L
T
S
A
-
D
K
-
Y
R
M
L
G
D
G
A
V
S
L
A
V
G
G
G
T
S
S
Q
V
R
L
F
T
SDG
T
S
R
T
VSLTNG
N
V
R
L
S
TSST
G
Y
L
Q
LGAD
A
M
T
P
DSTGTYALGSAS
R
A
W
S
G
G
F
T
QAAFTVT---------------------------
117
Fugue
56.69
16%
-39
- C5 -
4RGP
6
?
A:
[2-256]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
T
E
Q
E
T
L
T
I
L
L
D
V
Y
A
Y
Y
Q
A
Y
Q
I
V
K
A
S
Q
F
F
S
D
D
I
I
F
L
L
E
L
L
K
E
R
R
E
L
N
V
D
F
L
F
Q
N
Q
V
H
L
Q
E
L
E
L
T
Y
H
I
S
L
L
D
N
A
Y
E
E
E
L
L
A
N
Y
I
M
D
L
E
A
K
L
--
R
N
--
D
H
-
I
I
D
F
V
R
S
V
S
P
I
L
Y
R
L
L
M
R
L
M
Q
S
-
Q
V
A
D
I
N
D
Y
I
Y
D
A
K
N
D
Q
Y
D
T
W
K
F
D
K
M
H
D
S
A
N
P
F
V
Q
N
F
V
A
K
G
R
D
S
K
I
T
S
R
S
L
A
D
F
I
Q
L
TDLP
Q
A
I
K
D
N
I
L
L
L
R
D
F
E
K
SV
R
N
P
L
A
H
LIKPFD
E
E
E
L
H
R
T
TGFS
S
Q
T
F
L
E
K
I
I
Q
L
A
V
F
S
G
I
H
Y
D
NDKF
Y
F
D
K
V
N
E
L
I
K
R
I
Y
Q
2
PsiBlast_PDB
55.81
35%
6
- C7 -
2XX1
2
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
50
PsiBlast_CBE
54.99
35%
5
- C7 -
2VMJ
1
?
A:
[211-262]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
25
PsiBlast_CBE
54.83
35%
17
- C7 -
2XX1
2
?
B:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
54.62
35%
11
- C7 -
1GS6
1
?
X:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
54.39
35%
5
- C7 -
2VM4
1
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
54.23
35%
2
- C7 -
2VN3
1
?
A:
[219-270]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
38
PsiBlast_CBE
54.15
35%
3
- C7 -
2JFC
1
?
F:
[217-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.13
35%
7
- C7 -
2XWZ
3
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
31
PsiBlast_CBE
54.11
35%
8
- C7 -
2ZON
1
?
C:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
45
PsiBlast_CBE
53.95
35%
13
- C7 -
1WA2
3
?
X:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
53.94
35%
6
- C7 -
2JFC
1
?
A:
[217-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
26
PsiBlast_CBE
53.91
35%
5
- C7 -
2XWZ
18
?
F:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
44
PsiBlast_CBE
53.87
35%
13
- C7 -
2BP0
1
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
42
PsiBlast_CBE
53.79
35%
9
- C7 -
2JFC
1
?
B:
[217-268]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
27
PsiBlast_CBE
53.79
35%
5
- C7 -
2XWZ
1
?
E:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
53.77
35%
7
- C7 -
2ZON
-
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.75
35%
8
- C7 -
1HAW
-
?
A:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
53.74
35%
5
- C7 -
2ZON
1
?
B:
[218-269]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
A
L
T
-
G
A
N
A
L
T
--
A
K
V
G
E
T
V
L
L
I
H
S
Q
A
N
R
D
T
R
P
H
L
I
-
G
G
-
H
G
D
W
V
--
W
E
T
G
K
F
A
N
P
P
Q
---------------------------------------------------------------------------------------------------------------------------