@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs0135: (2015-11-28 )
MEMKQISETTLKITISMEDLEDRGMELKDFLIPQEKTEEFFYSVMDELDLPENFKNSGMLSFRVTPKKDRIDVFVTKSELSKDLNLEELADLGDISKMSPEDFFKTLEQSMLEKGDTDAHAKLAEIENMMDKATQEVVEENVSEEQPEKEVETIGYVHYVFDFDNIEAVVRFSQTIDFPIEASELYKNGKGYHMTILLDLENQPSYFANLMYARMLEHANVGTKTRAYLKEHSIQLIHDDAISKLQMIEMG
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20...-.....30..-......40........-50.---.......60........----70........80-........90..------......100.......110.......120.......130.......140.......150-.......160-..--.....170.---...-.-..180---.......190.......200.......210......-----.220.......230.......240.......250-----------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
M
K
QISE
T
T
L
K
I
T
I
S
M
E
D
L
E
DRG-M
E
L
K
D
F
LI
P
-
Q
E
K
T
E
E
F
F
Y
S
V
M
D
ELD-LPE---NFKNS
G
M
L
S
F
R
VTPKKD----
R
I
D
V
F
V
T
K
S
E
LS-KDL
N
L
E
E
L
A
DLG------DISKM
S
P
E
D
F
F
K
T
L
E
Q
S
M
L
EKGDT
D
A
H
A
K
L
A
E
I
E
N
M
M
D
K
A
T
Q
E
V
V
E
ENVSEEQ
P
E
K
E
V
E
-
T
I
G
Y
V
H
Y
V
F
D-FD--
N
I
E
A
V
V
R
F
S
---
Q
TI-D-FPI
E
A
---
S
E
L
YKNGKG
Y
H
M
T
I
L
L
DLENQ
P
S
Y
F
A
N
L
M
Y
A
R
M
L
E
H-----ANVG
T
K
T
R
A
Y
L
K
EH
S
I
Q
L
I
HDDAI
S
K
L
Q
M
IEMG------------------------
37
Fugue
77.24
18%
-34
* C2 *
4XDN
5
SCC4_YEAST
A:
[24-640]
G
D
K
L
S
I
S
Q
V
Y
H
L
A
Q
E
Y
R
D
H
A
Y
S
I
A
NKIGS
E
E
G
L
K
Q
Y
Y
G
L
M
N
M
S
I
Q
M
F
Q
L
L
K
T
KCTLS
V
L
E
D
S
K
V
T
F
E
M
V
E
L
L
I
Q
ETYN
F
D
L
A
E
L
Y
I
S
S
L
K
E
R
L
Q
T
H
QSDTDL
V
E
E
I
M
R
C
E
F
L
L
L
H
D
L
P
L
M
R
DS
K
F
H
Y
K
I
A
L
R
N
C
N
E
L
V
Q
Y
M
V
N
LQD
E
L
Y
Q
N
W
A
S
V
F
Q
Y
V
G
V
M
L
C
I
K
L
KQ
H
R
R
V
K
T
S
F
H
G
L
L
S
Q
CREKS
Q
W
K
W
F
L
N
L
C
Y
V
N
Y
L
L
N
E
RFPIP
E
D
A
L
Q
E
L
R
S
TELHTVG
P
E
L
Y
A
W
K
L
A
L
E
M
V
I
Q
L
C
K
DGNI
T
D
H
L
N
E
F
K
N
F
F
D
T
N
K
Q
S
L
V
T
N
EGKGCVIKIMPR
I
A
L
K
V
E
L
PMIFH
Y
K
E
L
K
N
I
L
L
L
L
Q
S
V
S
Y
I
VNCYD
E
K
G
N
F
S
R
K
F
L
P
K
V
Y
S
T
T
Q
K
L
I
K
N
I
A
A
G
G
V
S
M
N
E
L
D
S
R
I
-
Q
T
Y
K
S
I
L
E
F
-
C
E
-----
F
Y
K
V
W
E
Q
T
L
-
L
K
---------
G
A
V
V
L
G
P
S
P
G
Y
V
----
R
L
-
L
Q
A
M
K
V
Q
F
E
-
G
G
G
A
V
E
E
Y
T
R
L
A
Q
SGGTS
S
E
V
K
M
I
S
L
L
N
C
Y
T
V
Q
A
A
R
V
S
R
C
S
G
D
K
Q
G
E
L
V
E
Q
C
N
K
V
W
L
Q
V
E
K
L
L
Q
E
T
D
L
Q
F
N
P
I
W
E
C
T
V
T
I
L
W
L
F
S
H
F
E
P
F
S
--
W
N
P
L
P
C
S
D
K
---
Q
R
A
-
E
-
Y
V
S
K
L
---
R
E
F
Y
S
S
N
K
F
V
N
-
R
F
K
L
K
K
A
L
L
L
Q
I
L
V
N
Y
L
G
G
R
M
L
E
H
D
L
G
E
I
Y
A
I
S
A
K
C
F
D
M
C
R
Q
Q
G
G
M
R
K
V
Q
Y
V
I
G
I
W
H
L
M
N
C
T
V
A
MR
G
K
D
V
A
L
T
N
A
K
L
E
A
L
V
K
Q
I
T
S
32
Fugue
65.25
20%
-79
- C5 -
3JTN
7
MECA2_BACSU
A:
[2-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
Y
Q
-
F
H
--
S
F
E
D
I
I
Q
L
S
---
E
S
L
-
Q
R
I
G
I
T
G
---
G
T
V
Y
H
Y
D
G
Q
Y
F
L
S
L
----
E
D
L
G
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
-----
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
--------------------------
24
HHSearch
64.05
20%
-98
* C5 *
3JTN
7
MECA2_BACSU
A:
[2-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
Y
Q
-
F
H
--
S
F
E
D
I
I
Q
L
S
---
E
S
L
Q
R
-
I
G
I
T
G
---
G
T
V
Y
H
Y
D
G
Q
Y
F
L
S
L
E
D
L
G
----
S
H
T
A
E
G
V
V
A
V
L
A
E
Y
-----
G
N
P
T
T
L
T
I
Y
R
L
Q
E
Y
G
K
L
I
M
D
G
N
A
V
E
T
I
Q
T
H
F
--------------------------
39
Fugue
60.34
8%
-58
- C3 -
4H7W
2
USB1_HUMAN
A:
[7-193]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
W
A
T
H
V
Y
V
P
Y
E
---------------
A
-
K
E
E
F
L
D
L
L
D
V
L
L
P
H
A
Q
T
Y
V
P
---
R
L
V
R
M
K
V
F
H
L
S
--------------------
L
S
-
Q
S
V
V
L
R
---------------
H
H
W
I
L
P
F
V
Q
A
L
K
A
R
M
--
T
S
F
H
R
F
F
F
T
A
N
Q
V
K
I
Y
T
N
----------------
Q
E
K
T
R
-
T
F
I
G
L
E
V
T
S
G
-
H
A
--
Q
F
L
D
L
V
S
E
V
---
D
R
V
-
M
-
E
E
F
N
L
---
T
T
F
Y
Q
D
P
S
-
F
H
L
S
L
A
W
C
V
G
D
A
R
L
Q
L
E
G
Q
C
L
Q
E
L
Q
A
I
-----
V
D
-
G
F
E
D
A
E
V
L
L
R
V
H
T
E
Q
V
R
C
K
S
G
N
K
F
F
S
M
P
L
K
------------------------
38
Fugue
59.07
13%
-44
- C2 -
2MJP
1
NTPA_METJA
A:
[10-193]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
Y
F
A
T
G
N
-
P
N
K
I
-
K
E
A
N
I
I
L
K
D
-
L
K
D
V
E
I
E
Q
I
----
K
I
S
-
Y
P
E
IQG
T
L
E
E
V
A
E
F
G
A
K
W
V
Y
N
I
L
----
K
K
P
V
I
V
E
D
S
G
F
F
V
E
A
L
N
----------------------
G
F
P
G
-
T
Y
S
K
F
V
Q
E
T
-----
I
G
N
E
G
I
L
K
L
L
E
G
-----------
K
--
D
N
R
N
A
Y
-
F
K
T
V
I
G
Y
C
D
E
-------
N
G
V
R
L
F
K
---
G
I
V
-
K
-
G
R
V
-
S
---
E
E
I
R
S
K
G
Y
G
F
A
Y
D
S
I
F
I
P
E
E
E
E
R
T
F
A
E
M
--------------
T
T
E
E
K
S
Q
I
S
H
R
K
K
A
F
E
E
F
K
K
F
L
L
D
R
I
------------------------------
34
Fugue
55.71
14%
-4
- C1 -
1FV1
4
DRB5_HUMAN
B:
[1-190]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
T
R
P
R
F
L
Q
-
Q
D
K
Y
E
C
H
F
F
N
G
T
E
R
V
R
-
F
L
H
---
R
D
I
Y
N
Q
E
E
D
L
R
F
D
S
D
V
G
----
E
Y
R
A
-------------
V
T
E
L
G
R
P
D
------
A
E
Y
W
N
S
Q
K
D
F
L
E
D
R
R
A
A
V
D
T
Y
C
R
H
N
Y
G
-
V
G
E
S
F
T
V
Q
R
R
V
E
P
----
K
V
T
V
Y
P
A
R
T
Q
T
L
Q
H
-
H
N
L
L
V
C
S
V
N
G
-
F
Y
--
P
G
S
I
E
V
R
W
F
RNS
Q
E
E
-
K
-
A
G
V
V
S
---
T
G
L
I
Q
N
G
-
D
W
T
F
Q
T
L
V
M
L
E
T
V
P
R
S
--
G
E
V
Y
T
C
Q
V
E
H
-----
P
S
V
T
S
P
L
T
V
E
W
R
A
--------------------------------------------
23
HHSearch
53.82
19%
-93
- C5 -
3JTP
10
MECA1_BACSU
A:
[7-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
F
V
L
R
-
F
G
--
D
F
E
D
V
I
S
L
S
---
K
L
N
---
V
N
G
S
K
---
T
T
L
Y
S
F
E
N
R
Y
Y
L
Y
V
D
F
C
D
M
T
--
D
E
E
V
E
N
Q
L
S
I
M
L
E
Y
-----
A
N
E
S
S
I
S
I
H
R
L
E
E
Y
G
K
L
I
I
S
E
H
A
L
E
T
I
K
K
H
F
A
S
------------------------
40
Fugue
49.46
12%
4
* C3 *
3PKV
-
?
A:
[2-222]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
I
K
Q
L
T
L
Y
T
A
-
E
L
D
R
M
L
A
F
Y
-
T
N
M
L
G
A
Q
H
V
-
H
E
Q
A
D
A
F
T
I
Q
L
---------------
G
V
S
Q
I
Q
F
R
A
A
A
D
G
T
K
P
F
Y
H
I
A
I
N
I
A
A
N
H
F
Q
-
E
G
K
A
W
L
S
G
F
G
E
L
------
L
T
E
N
D
E
D
Q
A
Y
F
P
F
F
N
A
Y
S
C
Y
V
E
D
P
S
G
N
----
I
I
E
L
I
S
R
Q
Q
A
A
P
V
L
D
K
P
F
S
A
D
Q
----
L
L
-
S
I
G
E
I
N
I
T
T
S
--
D
--
V
E
Q
A
A
T
R
L
K
---
Q
A
E
-
L
-
P
V
K
L
D
QIE
P
A
G
L
N
F
I
G
D
Q
D
L
F
L
L
L
G
P
P
G
R
R
W
L
F
S
E
R
V
A
V
I
Y
P
L
Q
-----
M
E
L
D
N
G
V
S
L
A
I
T
E
T
G
E
L
V
I
L
-------------------------------------
35
Fugue
47.88
13%
2
- C3 -
3CT8
2
?
A:
[14-146]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
L
Y
F
Q
G
M
L
H
H
V
E
I
N
V
D
H
L
E
E
S
I
A
F
W
D
W
L
L
G
E
L
G
-
Y
E
D
---
Y
Q
S
W
S
R
G
K
S
Y
K
H
G
K
T
Y
L
----
V
F
V
Q
-
T
E
D
R
F
Q
T
-
P
T
F
H
R
K
R
T
G
L
N
H
------
L
A
F
H
A
A
S
R
E
K
V
D
E
L
T
Q
K
L
K
E
R
G
D
P
I
L
-----------------------
Y
E
D
R
H
P
F
A
G
G
-
P
N
H
Y
A
V
F
C
E
D
-
P
N
RI
K
V
E
I
V
A
P
---------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.95
30%
108
- C4 -
2FAK
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
41.71
30%
102
- C4 -
2GPL
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
41.60
30%
112
- C4 -
3GPJ
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
41.49
30%
112
- C4 -
3TDD
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
41.43
30%
116
- C4 -
3OKJ
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
41.32
30%
110
- C4 -
3E47
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
41.27
30%
119
- C4 -
3HYE
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
41.24
30%
112
- C4 -
2F16
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
40.76
30%
110
- C4 -
3MG4
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
40.58
30%
108
- C4 -
3DY4
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
40.41
30%
120
- C4 -
3GPT
-
PSB3_YEAST
I:
[157-203]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
E
D
L
F
E
T
I
S
Q
A
L
L
N
A
A
D
R
D
A
L
S
G
W
G
A
V
V
Y
I
I
K
K
--
D
E
V
V
K
R
Y
L
K
M
R
Q
D
-------------------------------------------------------------------------------------------------------------------------------------------------