@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu02900: (2016-06-05 )
MTISLAKGQKVDLTKTNPGLSKVVVGLGWDTNKYDGGHDFDLDSSVFLLDAAGKCASPNDFIFYNQLEGGNGSVVHSGDNLTGAGEGDDENVKVNLSAVPANIDKISFVITIHDAEARSQNFGQVSNAFVRIVNEETNEELIRYDLAEDFSIETAIIAGELYRHNGEWKFSAIGSGYQGGLARIATDYGLQVG
Atome Classification :
(20 SA)
-----------------------------------------...-......10........20.-----.......--30.....-...40.----...--....-----50-.....-.----..60........70........80----------------------------------.......---------------.-.90.-.......100----....-...---------.--.110....--------...120....--...-----130---.--........140.......--------150......---------.160..-----.-....170.......180.....-..190.-------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------
M
T
I
-SLAKG
Q
K
V
D
L
TKTNPGL
S
K
-----
V
V
V
G
LGW--DTNKYDG-GHDFDL----DS
S
--
V
F
L
L
-----DA-AGKCA-S----PN
D
F
I
F
Y
NQLEGGNG
S
V
V
HSGDN-----------------------------------LTGAGEG---------------D-DE
N
V
-
K
V
N
L
S
AVP------ANI
D
-
K
I
S
---------
F
--
V
I
T
I
HDAE--------ARSQ
N
F
G
Q
V
S
--
N
A
F
-----
V
-----
R
--IVNEET
N
E
E
L
I
R
Y
D
L
AED--------FSI
E
T
A
I
I
A
---------
G
E
L
Y
RH-----N-G
E
W
K
F
S
AIGSGYQG
G
L
A
R
I
A
T
D-YGLQVG-------------------
2
PsiBlast_PDB
88.20
59%
-96
- C8 -
2KXV
2
?
A:
[19-189]
------------------------------------------------------------
S
M
K
N
-----
V
L
V
G
L
G
W
--
D
A
R
S
T
D
G
--
Q
D
F
D
L
----
D
A
S
--
A
F
L
L
-----
A
A
-
N
G
K
V
R
-
G
----
D
A
D
F
I
F
Y
N
N
L
K
S
A
D
G
S
V
T
H
T
G
D
N
-----------------------------------
R
T
G
E
G
D
G
---------------
D
-
D
E
S
L
-
K
I
K
L
D
A
V
P
------
G
D
V
D
-
K
I
I
---------
F
--
V
V
T
I
H
D
A
Q
--------
A
R
R
Q
S
F
G
Q
V
S
--
G
A
F
-----
I
-----
R
--
L
V
N
D
D
N
Q
T
E
V
A
R
Y
D
L
T
E
D
--------
A
S
T
E
T
A
M
L
F
---------
G
E
L
Y
R
H
-----
N
-
G
E
W
K
F
R
A
V
G
Q
G
Y
A
G
G
L
A
S
V
C
A
Q
-
Y
G
I
----------------------
11
HHSearch
88.07
58%
-82
- C8 -
2KXT
-
?
A:
[1-174]
------------------------------------------------------------
S
M
K
N
-----
V
L
V
G
L
G
W
--
D
A
R
S
T
-
D
-
G
Q
D
F
D
L
----
D
A
S
--
A
F
L
L
-----
A
A
-
N
G
K
V
R
-
G
----
D
A
D
F
I
F
Y
N
N
L
K
S
A
D
G
S
V
T
H
T
G
D
N
-----------------------------------
R
T
G
E
G
D
G
---------------
D
-
D
E
S
L
-
K
I
K
L
D
A
V
P
------
G
D
V
D
-
K
I
I
---------
F
--
V
V
T
I
H
D
A
Q
--------
A
R
R
Q
S
F
G
Q
V
S
--
G
A
F
-----
I
-----
R
--
L
V
N
D
D
N
Q
T
E
V
A
R
Y
D
L
T
E
D
--------
A
S
T
E
T
A
M
L
F
---------
G
E
L
Y
R
H
-----
N
-
G
E
W
K
F
R
A
V
G
Q
G
Y
A
G
G
L
A
S
V
C
A
Q
-
Y
G
I
N
A
S
-------------------
1
PsiBlast_PDB
87.59
59%
-83
- C8 -
2KXT
-
?
A:
[1-171]
------------------------------------------------------------
S
M
K
N
-----
V
L
V
G
L
G
W
--
D
A
R
S
T
D
G
--
Q
D
F
D
L
----
D
A
S
--
A
F
L
L
-----
A
A
-
N
G
K
V
R
-
G
----
D
A
D
F
I
F
Y
N
N
L
K
S
A
D
G
S
V
T
H
T
G
D
N
-----------------------------------
R
T
G
E
G
D
G
---------------
D
-
D
E
S
L
-
K
I
K
L
D
A
V
P
------
G
D
V
D
-
K
I
I
---------
F
--
V
V
T
I
H
D
A
Q
--------
A
R
R
Q
S
F
G
Q
V
S
--
G
A
F
-----
I
-----
R
--
L
V
N
D
D
N
Q
T
E
V
A
R
Y
D
L
T
E
D
--------
A
S
T
E
T
A
M
L
F
---------
G
E
L
Y
R
H
-----
N
-
G
E
W
K
F
R
A
V
G
Q
G
Y
A
G
G
L
A
S
V
C
A
Q
-
Y
G
I
----------------------
13
HHSearch
66.90
25%
-87
- C8 -
2QNG
2
?
A:
[28-197]
-----------------------------------------------------------
K
G
I
R
K
-----
V
E
L
A
V
K
W
--
D
P
S
P
P
-
G
-
D
P
A
T
D
L
----
D
I
V
A
A
T
F
L
A
-----
G
D
A
Y
G
K
P
A
--------
Y
V
V
H
F
D
S
-
R
S
P
D
G
T
I
Y
L
N
R
D
S
-----------------------------------
K
D
G
K
G
F
G
---------------
W
-
D
E
V
M
-
T
L
E
L
N
R
L
D
------
S
R
Y
A
-
R
V
V
---------
V
--
G
V
V
I
Q
Q
R
D
---------
A
H
R
T
F
V
G
V
L
--
N
P
G
-----
L
-----
R
--
M
R
E
--
G
Y
T
V
L
A
E
D
D
F
G
-
G
--------
V
L
G
S
T
A
A
T
V
---------
G
E
F
V
R
D
D----
S
-
G
E
W
T
F
H
P
G
I
H
G
Y
D
S
D
P
A
T
F
A
R
V
-
M
G
G
R
Q
--------------------
12
HHSearch
66.21
22%
-94
- C8 -
2QZ7
5
?
A:
[22-191]
------------------------------------------------------------
G
L
K
R
-----
V
D
V
R
L
K
W
--
D
P
S
P
W
-
D
-
R
P
P
H
H
L
----
D
I
I
--
A
T
T
Y
-----
A
A
-
D
A
P
H
G
-
R
----
P
V
Y
V
V
Q
F
D
-
K
R
S
P
D
G
T
I
N
M
S
R
H
S
-----------------------------------
R
T
G
Q
G
F
G
---------------
F
-
V
E
E
M
-
T
F
E
L
D
R
L
S
------
P
S
I
A
-
R
V
I
---------
V
--
G
V
A
I
H
Q
D
N
---------
G
H
K
T
F
D
D
V
S
--
N
T
G
-----
V
-----
V
--
V
A
E
G
--
Y
R
E
L
L
T
D
G
F
E
-
R
--------
V
A
G
A
T
A
A
T
V
---------
A
E
F
T
R
N
A----
S
-
G
A
W
E
F
R
E
A
V
R
G
F
D
S
D
P
V
L
F
A
T
E
-
M
G
S
A
P
R
-------------------
21
Fugue
59.81
24%
-58
* C8 *
2QNG
2
?
A:
[28-197]
-----------------------------------------------------------
K
G
I
R
K
-----
V
E
L
A
V
K
W
--
D
P
S
P
P
G
D
P
A
T
D
L
D
I
----
V
A
A
--
T
F
L
A
-----
G
D
-
A
Y
G
--------
K
P
A
Y
V
V
H
F
D
S
R
S
P
D
G
T
I
Y
L
N
R
D
S
-----------------------------------
K
D
G
K
G
F
G
---------------
W
-
D
E
-
V
M
T
L
E
L
N
R
L
D
------
S
R
Y
A
-
R
V
V
---------
V
--
G
V
V
I
Q
Q
R
D
--------
A
H
R
T
F
V
G
V
L
N
--
P
G
L
-----
R
M
----
R
--
E
----
G
Y
T
V
L
A
E
D
D
F
G
G
V
--------
L
G
-
S
T
A
A
T
V
---------
G
E
F
V
R
D
-----
D
S
G
E
W
T
F
H
P
G
I
H
G
Y
D
S
D
P
A
T
F
A
R
V
M
G
G
R
Q
---------------------
22
Fugue
49.21
21%
-66
- C7 -
2W1N
1
A:
[10-237]
-------------------------------------AE
V
T
G
S
V
-
S
L
E
A
L
E
E
V
Q
V
G
E
------
N
-----
I
E
V
G
V
G
I
--
D
E
L
V
N
A
E
-
A
F
A
Y
D
F
T
L
N
Y
D
E
N
--
A
F
E
Y
-----
V
E
-
A
I
S
---
D
----
D
G
V
F
V
N
A
K
K
I
E
D
G
K
V
R
V
L
V
S
S
L
T
GEPLPAKEVL
A
K
V
V
---------------------
L
R
A
E
A
K
T
---------------
E
-
G
S
N
L
-
S
V
T
N
S
S
V
G
D
GEG
L
V
H
E
I
A
-
G
T
E
---------
K
--
T
V
N
I
I
E
G
T
S
P
E
I
V
V
N
P
V
R
D
F
K
A
S
E
I
N
KK
N
V
T
-----
V
-----
T
--
W
T
E
P
E
T
T
E
G
L
E
G
Y
I
L
Y
K
D
--------
G
K
K
V
A
E
I
G
K
---------
D
E
T
S
Y
T
F
K
KLN
R
-
H
T
I
Y
N
F
K
I
A
A
K
Y
S
N
G
E
V
S
S
K
E
S
-
L
T
L
R
T
A
-------------------
26
Fugue
45.48
20%
-110
- C5 -
3G8Q
2
CDAT8_METKA
A:
[1-278]
-----------------------------------------
M
K
V
-
S
L
A
-
G
Q
T
V
D
V
K
K
I
L
N
E
I
P
K
R
T
V
T
A
A
L
L
E
G
G
E
--
I
V
A
V
E
E
A
-
D
D
E
H
A
E
----
R
K
L
--
V
R
R
H
-----
D
V
-
E
G
K
V
V
-
F
V
TAR
P
C
L
Y
C
A
R
E
L
A
E
A
G
V
A
G
V
V
Y
L
G
R
G
RGL
G
P
Y
Y
L
A
R
S
G
V
E
V
V
E
V
HPDEPLGYDPVDRLD
V
L
L
T
F
G
G
N
P
YLT
E
E
D
V
A
A
R
V
Y
C
L
L
T
-
G
R
G
F
-
D
A
D
I
A
P
A
P
------
E
N
L
S
G
R
V
E
---------
I
--
M
V
T
R
G
D
P
D
--------
E
A
V
E
L
L
K
E
E
L
--
P
V
F
R
----
I
-----
R
R
F
L
I
S
G
E
F
D
R
D
E
L
R
E
R
I
L
E
D
IEPRILD
P
F
A
V
R
A
R
I
A
R
---------
A
G
A
F
S
S
-----
S
-
R
E
A
E
V
F
I
G
D
V
L
T
S
V
G
R
E
V
N
L
N
D
-
P
R
T
V
V
T
V
D
V
L
GP
R
V
S
V
G
V
E
K
R----
24
Fugue
42.97
18%
-50
- C6 -
2HGS
6
GSHB_HUMAN
A:
[304-474]
----------------------------------------T
K
K
V
-
Q
Q
E
L
S
R
P
G
M
L
E
M
L
L
P
G
Q
P
E
-----
A
V
A
R
L
R
A
--
T
F
A
G
L
Y
S
------
L
----
D
V
G
--
E
E
G
D
-----
Q
A
-
I
A
E
A
L
A
A
----
P
S
R
F
V
L
K
P
Q
R
E
G
G
-------
G
N
N
-----------------------------------
L
Y
G
----------------------
E
E
M
-
V
Q
A
L
K
Q
L
K
------
D
S
E
E
-
R
A
S
---------
Y
--
I
L
M
E
K
I
E
P
--------
E
P
F
E
N
C
L
L
R
P
--
G
S
P
-----
A
-----
R
--
V
V
Q
C
I
S
E
L
G
I
F
G
V
Y
V
R
Q
E
--------
K
T
L
V
M
N
K
H
V
---------
G
H
L
L
R
T
-----
K
-
A
I
E
H
A
D
G
---
G
V
A
A
G
V
A
V
L
D
N
P
-
Y
P
V
----------------------
19
HHSearch
40.86
19%
-170
- C8 -
3DUK
-
?
A:
[104-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---------
F
L
L
L
K
L
-----
D
-
G
K
W
T
I
V
N
K
----------------------------------------
18
HHSearch
39.83
20%
-129
- C8 -
3BLZ
-
?
A:
[106-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
N
L
L
K
V
-----
E
-
G
K
W
T
V
V
S
K
----------------------------------------
6
PsiBlast_PDB
38.86
31%
-84
* C7 *
2VO8
-
?
A:
[966-1034]
------------------------------------------------------------------------
G
L
N
G
--
D
T
E
V
Y
S
A
-
E
Y
L
F
E
Y
----
N
A
E
--
A
F
I
L
-----
N
----
E
I
T
-
S
----
F
N
D
S
L
F
V
K
S
K
E
V
E
P
G
K
V
R
I
L
V
A
S
-----------------------------------
L
G
N
E
I
E
K
---------------
D
-
S
D
L
V
-
K
V
N
L
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
36.76
14%
-48
- C3 -
2BA1
1
CSL4_ARCFU
A:
[1-179]
-----------------------------------------
M
R
F
-
V
M
-
P
G
D
R
I
G
------------------------
S
A
E
E
Y
V
K
-
G
E
G
V
Y
E
----
E
G
G
--
E
L
F
A
-----
A
V
-
A
G
K
L
I
-
I
----
K
D
R
V
A
K
V
E
S
I
S
--
P
I
P
E
I
V
K
G
D
V
-----------------------------------
V
L
G
R
V
V
D
---------------
L
R
N
S
I
A
-
L
I
E
V
S
S
K
K
------
G
E
N
R
-
G
P
S
---------
N
R
G
I
G
I
L
H
V
S
N
--------
V
D
E
G
Y
V
K
E
I
S
--
E
A
V
GYL
D
I
L
-----
K
--
A
R
V
I
G
D
N
L
R
L
S
T
K
E
E
E
M
G
--------
V
L
R
A
L
C
S
N
C
---------
K
T
E
M
V
R
-----
E
-
G
D
-
I
L
K
C
P
E
C
G
R
V
E
K
R
-
K
I
S
T
D
-
Y
G
K
G
E
W
-------------------
30
Fugue
36.45
21%
-37
- C7 -
3OC8
6
A:
[4-137]
-----------------------------------------
M
E
I
Y
P
H
I
K
V
Y
E
G
T
L
S
R
L
K
P
G
-
G
A
-----
M
I
A
V
L
E
Y
--
D
V
N
E
L
S
K
--
H
G
Y
T
N
----
L
W
D
--
V
Q
F
K
-----
V
L
-
V
G
V
-
P
-
H
----
A
E
T
G
V
I
Y
D
P
V
Y
E
E
T
V
K
P
Y
Q
P
S
N
N
-----------------------------------
L
T
G
---------------------------------------------
K
K
L
---------
Y
--
N
V
S
T
N
D
M
H
------------
N
G
Y
K
W
S
--
N
T
M
-----
F
-----
S
--
N
S
N
Y
K
T
Q
I
L
L
T
K
G
D
G
S
G
V
--------
K
L
Y
S
K
A
---------------
Y
S
E
-----
N
-
F
K
----------------------------------------------
20
HHSearch
35.51
20%
-96
- C8 -
3FKA
3
?
A:
[101-115]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
V
L
L
H
-----
E
-
G
S
W
R
I
V
S
K
----------------------------------------
23
Fugue
32.86
8%
-97
* C6 *
2CHU
4
?
A:
[10-296]
L
P
I
S
M
S
D
EGDSFLVKDSLGENKIPKNPS
K
V
V
I
LD
L
G
I
L
D
T
F
D
A
L
-
K
L
N
D
K
V
V
G
V
P
A
K
N
L
P
K
Y
L
Q
-----
Q
F
K
N
K
P
S
VG
G
V
Q
Q
V
D
F
-
E
A
I
N
A
L
----
K
P
D
--
L
I
I
I
S
GRQS
K
F
-
Y
D
K
L
K
-
E
----
I
A
P
T
L
F
V
G
L
D
N
A
N
F
L
S
S
F
E
N
N
V
L
-----------------------------------
S
V
A
K
L
Y
G
---------------
L
-
E
K
E
A
-
L
E
K
I
S
D
I
K
------
N
E
I
E
-
K
A
K
S
I
VDED
K
K
A
L
--
I
I
L
T
N
S
N
K
--------
I
S
A
F
G
P
Q
S
R
F
--
G
I
I
-----
H
DVLGI
N
--
A
V
D
E
N
I
K
G
K
S
I
N
S
E
F
I
L
E
--------
K
N
P
D
Y
I
F
V
V
D
RNVILGNK
E
R
A
Q
G
I
-----
L
-
D
N
A
L
V
A
K
T
K
A
A
Q
N
K
K
I
I
Y
L
D
P
E
-
Y
W
Y
L
A
S
GNG
L
E
S
L
K
T
M
I
L
E
I
K
N
A
V
K
28
Fugue
31.30
9%
-90
- C4 -
1ML8
-
YHFA_ECOLI
A:
[1-134]
-----------------------------------------
M
Q
A
-
R
V
K
W
V
E
G
L
T
F
L
G
E
S
A
S
-------------
G
H
--
Q
I
L
M
D
G
N
-
S
G
D
K
A
P
----
S
P
M
--
E
M
V
L
-----
M
A
-
A
G
G
C
S
-
A
----
I
D
V
V
S
I
L
Q
K
G
R
Q
---------------------------------------------------
D
V
---------------
V
-
D
C
E
V
-
K
L
T
S
E
R
R
E
------
R
L
F
T
-
H
I
N
---------
L
--
H
F
I
V
T
G
R
D
--------
L
K
D
A
A
V
A
R
A
V
--
D
L
S
-----
A
-----
E
--
K
Y
C
S
V
A
L
M
L
E
K
A
V
N
I
T
H
S
--------
Y
E
V
V
A
A
-------------------------------------------------------------------------
7
PsiBlast_PDB
30.30
33%
-82
* C10 *
1CNV
-
CONB_CANEN
A:
[120-172]
---------------------------------------------------
K
V
A
L
D
G
I
H
F
D
I
Q
K
-----
P
V
D
E
L
N
W
--
D
N
L
L
E
E
L
-
Y
Q
I
K
D
V
----
Y
Q
S
--
T
F
L
L
-----
S
A
-
A
P
G
C
L
-
S
----
P
D
E
Y
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
29.26
27%
-111
* C11 *
4LVN
-
?
C:
[70-117]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
R
D
T
A
S
N
M
F
F
L
Q
L
S
S
V
--------
T
S
D
D
T
A
V
Y
Y
---------
C
V
I
Y
R
Y
-----
D
-
G
Q
W
V
F
D
D
W
G
A
G
-------------------------------------
9
PsiBlast_PDB
29.02
27%
-125
- C11 -
4LVO
-
?
C:
[70-118]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
T
R
D
T
A
S
N
M
F
F
L
Q
L
S
S
V
--------
T
S
D
D
T
A
V
Y
Y
---------
C
V
I
Y
R
Y
-----
D
-
G
Q
W
V
F
D
D
W
G
A
G
-------------------------------------