@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu20770: (2016-07-02 )
MAGYLNNIALNLEIVLKNKADSPEVSETLVTRICENLLLSKEVSFLKADGSVENFKLSDMEYEITNTEELPE
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...------......----10........20..----.--...-----..----30.-----------------.------...--------..-.40........50..---------.------.....60......-...70.--------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAG------YL
N
N
I
A
----
L
N
L
E
I
V
LKNKADSP----
E
--
V
S
E
-----
T
L
----
V
T
R
-----------------
I
------
C
E
N
--------
L
L
-
L
S
KEV
S
F
L
KADGSVE---------
N
------
F
K
LSD
M
-
E
Y
EIT
N
-
T
E
ELPE--------------------------------------------------------------------------------------------
4
HHSearch
81.37
100%
-138
- C- -
2DLB
-
YOPT_BACSU
A:
[2002-2071]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
------
Y
L
N
N
I
A
----
L
N
L
E
I
V
L
K
N
K
A
D
S
P
----
E
--
V
S
E
-----
T
L
----
V
T
R
-----------------
I
------
C
E
N
--------
L
L
-
L
S
K
E
V
S
F
L
K
A
D
G
S
V
E
---------
N
------
F
K
L
S
D
M
-
E
Y
E
I
T
N
-
T
E
E
L
P
---------------------------------------------------------------------------------------------
1
PsiBlast_PDB
80.91
98%
-138
- C- -
2DLB
-
YOPT_BACSU
A:
[2002-2071]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
------
Y
L
N
N
I
A
----
L
N
L
E
I
V
L
K
N
K
A
D
S
P
----
E
--
V
S
E
-----
T
L
----
V
T
R
-----------------
I
------
C
E
N
--------
L
L
-
L
S
K
E
V
S
F
L
K
A
D
G
S
V
E
---------
N
------
F
K
L
S
D
M
-
E
Y
E
I
T
N
-
T
E
E
L
P
---------------------------------------------------------------------------------------------
14
Fugue
71.79
100%
-24
- C- -
2DLB
-
YOPT_BACSU
A:
[2002-2071]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
------
Y
L
N
N
I
A
----
L
N
L
E
I
V
L
K
N
K
A
D
S
P
----
E
--
V
S
E
-----
T
L
----
V
T
R
-----------------
I
------
C
E
N
--------
L
L
-
L
S
K
E
V
S
F
L
K
A
D
G
S
V
E
---------
N
------
F
K
L
S
D
-
M
E
Y
E
I
T
N
-
T
E
E
L
P
---------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.14
60%
-216
- C2 -
4PUF
-
SLRP_SALT1
A:
[737-759]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
--
I
N
Q
-----
T
L
----
F
T
E
-----------------
I
------
M
E
N
--------
I
L
-
L
K
K
E
V
S
S
L
---------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
45.82
17%
-175
- C2 -
4ORL
-
?
A:
[27-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
N
L
V
F
Q
G
--
R
S
T
----
N
--
V
D
K
-----
Q
K
----
A
T
A
-----------------
A
------
M
Q
E
--------
F
F
-
T
K
N
K
V
S
G
F
N
V
-------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.69
35%
-193
- C2 -
1VQ3
-
PURS_THEMA
A:
[51-70]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
N
K
----
E
--
K
A
Y
-----
E
I
----
V
K
K
-----------------
A
------
C
E
E
--------
L
L
-
V
----------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
44.81
19%
-53
* C2 *
2RF4
-
RPA14_YEAST
B:
[16-101]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
T
P
V
V
I
H
A
T
Q
L
P
Q
----
H
--
V
S
T
-----
D
E
----
V
L
Q
-----------------
F
------
L
E
S
--------
F
I
-
D
E
K
E
N
I
--
I
D
I
D
T
N
L
---------
S
------
S
S
I
S
Q
L
-
K
R
I
Q
R
D
-
F
K
G
L
P
P
--------------------------------------------------------------------------------------------
17
Fugue
44.07
18%
111
- C2 -
3J9Q
-
?
A:
[2-386]
SFFHGVTV
T
N
V
D
I
G
A
RTIALPASSVIG
L
C
D
V
F
T
PGAQASAKPN
V
P
V
L
L
TS
K
K
D
A
A
A
A
F
GIGS
S
I
Y
L
A
C
E
A
I
Y
N
R
AQ
A
V
I
V
A
V
G
VETAET
P
E
A
Q
A
S
A
V
I
GGISAAGERTG
L
Q
A
L
L
D
GKSRFNAQPR
L
L
V
A
P
GHSAQ
Q
A
V
A
T
A
M
D
G
L
A
E
K
L
R
A
I
A
I
L
D
G
PNST
D
E
A
A
V
A
Y
A
K
N
F
GSKR
L
F
M
V
D
PG
V
Q
V
W
D
SATN
A
A
R
N
A
PA
S
A
Y
A
A
G
L
F
A
W
T
D
A
E
YGFWSSPSNKEIKGVTGTS
R
P
V
E
F
L
D
GDETC
R
A
N
L
L
N
N
A
N
I
A
T
I
I
R
D
DGY
R
L
W
G
NRTLSSDSKWA
F
V
T
------
R
V
R
T
M
D
----
L
V
M
D
A
I
L
A
G
H
K
W
A
V
----
D
RG
I
T
K
-----
T
Y
----
V
K
D
-----------------
V
------
T
E
G
--------
L
---
R
A
F
M
R
D
L
K
N
Q
G
A
V
I
---------
N
------
F
E
V
Y
A
--
D
P
D
L
N
S
-
A
S
Q
L
A
Q
G
K
V
Y
W
N
I
R
F
T
D
VPPAENPNFRVEVTDQWLTEVLDVA--------------------------------------------------------
8
HHSearch
42.80
8%
-134
- C2 -
4Q53
5
?
A:
[27-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
V
D
L
I
I
Q
N
--
K
S
T
----
H
--
A
D
K
-----
R
T
----
A
E
G
-----------------
T
------
M
A
A
--------
F
F
-
S
N
H
K
V
G
S
F
N
V
-------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.50
27%
-34
- C2 -
4GFH
2
TOP2_YEAST
A:
[347-471]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
N
M
F
----
I
F
I
N
C
L
I
E
N
P
A
F
T
S
----
Q
--
T
K
E
-----
Q
L
----
T
T
R
-----------------
V
KDFG
S
R
C
E
---------
I
P
-
L
E
Y
I
N
K
I
M
K
T
D
L
A
T
R
---------
M
------
F
E
I
A
D
A
N
E
S
R
I
T
N
-
Y
P
K
L
E
D
--------------------------------------------------------------------------------------------
6
HHSearch
41.00
40%
-81
- C2 -
1GTD
-
PURS_METTH
A:
[49-68]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
S
L
----
E
--
A
V
E
-----
R
E
----
V
E
D
-----------------
M
------
C
Q
R
--------
L
L
-
C
----------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
38.46
18%
-102
- C2 -
2F6M
-
VPS28_YEAST
B:
[51-78]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
----
S
--
I
D
D
-----
T
Q
----
Y
T
N
-----------------
T
------
V
D
K
--------
L
L
-
K
Q
F
K
V
Y
L
N
S
Q
N
K
-----------------------------------------------------------------------------------------------------------------------------------
16
Fugue
38.28
19%
80
- C2 -
4WD8
4
?
A:
[25-292]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SK
I
I
F
R
L
L
L
N
V
L
M
S
I
I
A
I
I
S
YQWYEQLG
I
H
L
T
V
A
P
F
S
L
L
G
I
A
I
A
I
F
L
G
F
R
N
S
A
S
Y
S
R
F
V
E
A
R
N
L
W
G
T
V
L
I
A
E
R
T
L
V
R
Q
L
R
N
I
LPAE
H
D
A
H
R
R
I
V
S
------
Y
L
V
A
F
S
----
W
S
L
K
H
Q
L
R
K
T
D
P
T
A
----
D
--
L
R
R
-----
L
L
P
E
E
R
V
T
E
-----------------
I
------
L
A
S
SM
P
T
N
R
I
L
L
L
-
A
G
N
E
I
G
Q
L
R
E
A
G
K
L
S
---------
D
------
I
T
Y
G
L
M
-
D
N
K
L
D
E
-
L
A
H
V
L
G
G
C
E
R
L
A
T
T
PVP
F
A
Y
T
L
I
L
Q
R
T
V
Y
L
F
C
T
L
LPFALVGDLHYM
T
P
F
V
S
V
F
I
S
Y
T
F
L
S
W
D
S
L
A
E
E
L
E
D
PFGTAANDLP
L
N
A
M
C
N
T
I
E
R
N
L
L
D
M
T
GQ
15
Fugue
36.18
19%
21
* C3 *
2HEQ
-
YORP_BACSU
A:
[1-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
G
DPLPKY
W
S
Y
P
V
G
----
L
A
V
E
I
N
N
N
A
R
Y
G
C
P
----
H
--
H
V
G
-----
R
-----
K
G
K
-----------------
I
------
I
E
H
--------
L
H
S
A
T
Y
D
Y
A
V
S
D
E
T
G
D
I
T
---------
Y
------
F
K
E
H
E
L
-
T
P
L
K
G
G
-
L
A
Y
V
L
E
HHHHHH--------------------------------------------------------------------------------------
21
Fugue
35.94
16%
28
- C1 -
1L7Y
-
UFM1_CAEEL
A:
[1-94]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
G
------
G
T
A
A
T
T
A
G
S
K
V
T
F
K
I
T
L
T
S
D
P
K
L
P
F
K
V
L
S
--
V
P
E
STP
F
T
A
V
----
L
K
F
-----------------
A
------
A
E
E
--------
F
K
-
V
P
A
A
T
S
A
I
I
T
N
D
G
V
G
VNPAQP
A
G
N
I
------
F
L
K
H
G
S
-
E
L
R
L
I
P
-
R
D
R
V
G
H
--------------------------------------------------------------------------------------------
18
Fugue
34.70
16%
58
- C2 -
1B24
-
DMO1_DESMO
A:
[7-99]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
S
G
I
S
A
------
Y
L
L
G
L
I
----
I
G
D
G
G
L
Y
K
L
K
Y
K
G
N
----
R
--
S
E
Y
-----
R
V
----
V
I
T
Q
KS
E
N
L
I
K
QH
I
A
P
L
M
Q
F
L
------
I
D
E
--------
L
N
-
V
K
S
K
I
Q
I
V
K
G
D
T
R
Y
E
L
--------
R
------
V
S
S
K
K
L
-
Y
Y
Y
F
A
N
M
L
E
R
I
R
---------------------------------------------------------------------------------------------
5
HHSearch
33.15
23%
-77
- C2 -
4IVN
-
?
A:
[38-72]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Q
T
I
T
D
L
A
R
N
T
----
Q
--
T
S
E
-----
A
T
----
V
V
R
-----------------
L
------
C
R
D
--------
M
G
------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
31.68
26%
-43
- C2 -
2YX5
-
PURS_METJA
A:
[50-68]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
E
----
E
--
K
V
K
-----
E
E
----
V
E
E
-----------------
M
------
C
K
K
--------
L
L
-
A
----------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
26.49
15%
11
- C2 -
1A0I
1
?
?:
[240-348]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PE
N
E
A
D
G
I
I
Q
G
L
V
W
G
TKG
L
A
N
------
E
G
K
V
I
G
----
F
E
V
L
L
E
S
G
R
L
V
N
A
T
----
N
--
I
S
R
-----
A
L
----
M
D
E
-----------------
F
------
T
E
T
--------
V
K
-
E
A
T
L
S
Q
W
G
F
F
D
A
C
T
I
---------
N
PYDG
W
A
C
Q
I
S
Y
M
-
E
E
T
P
D
G
-
S
L
R
H
P
S
F
V
M
FR---------------------------------------------------------------------------------------
11
HHSearch
25.66
25%
86
- C2 -
5AKA
-
RL31_ECOLI
Z:
[50-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
A
T
G
G
R
V
D
---------
R
------
F
N
--------------------------------------------------------------------------------------------------------------