@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu27680: (2016-07-13 )
MEELLTIAFRTVVLYFVILVIFRFMGKREIGELSILDLVVFIMMAEIAVLAIENVDDHLFHTILPMLVLMIIQVTLAYFSLKNRKVRQLLDGKPTIIIKYGKIDEEAMKSQRYNFDDLMVQLRENSIDRVADVSFAILEPSGKLTIVKKENSGEHRQLEMPLIIDGFIQTENLSRISKDRKWLLESLQKHGYTNPSDISFCSFTDGEIYIDEKDGHRT
Atome Classification :
(20 SA)
--------------------------------------------.......-..10....-----....20....-....30.....-...40........50.-----.......60........70-.-------------------........80........90----........--100--.----.......110...-....120....-...130.---.....------------..140----------....-------...-----------.150-----.-----------...-----------.....160--------...--...------..170---------------------..-.------.....----------------.180--.........190-........200.-.-.-....210......------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------
M
E
E
L
L
T
I
-
A
F
R
T
V
V
L
Y
-----
F
V
I
L
V
I
F
R
F
M-GKREIG
E
L
S
I
L
-
D
L
V
V
F
I
M
M
A
E
I
A
V
L
AI-----ENV
D
D
H
L
F
H
T
I
L
P
M
L
V
L
M
--
I
-------------------
I
Q
V
T
L
A
Y
F
SLK
N
R
K
V
R
Q
L
LD----GK
P
T
I
I
I
K--YG---K----I
D
E
E
A
M
K
SQRY
N
F
-
D
D
L
M
V
Q
L
R
ENS-IDRVA-D---
V
S
F
A
I
------------LEP-S----------G
K
L
T
-------
I
V
K
-----------KE-------N-----------SGE-----------H
R
Q
LEM
P
---------
L
I
I
--
D
G
F
------IQT-----------------------
E
N
-
L
------
S
R
I
S
K
----------------
D
R
----
K
W
L
L
E
S
L
Q
KHG--YTNPSD
I
S
F
C
S
F-T-D-
G
E
I
Y
I
DEKDGHRT------------------------------
10
PsiBlast_PDB
77.87
25%
-94
- C5 -
3C6F
1
YETF_BACSU
A:
[16-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
G
---
E
----
L
Q
Y
K
V
M
K
K
N
K
I
D
I
-
N
Q
L
Q
S
M
L
R
Q
A
G
-
S
F
S
I
Q
-
E
---
V
E
Y
A
I
------------
M
E
T
-
N
----------
G
M
V
S
-------
V
L
P
-----------
K
S
DF-----
D
-----------
K
P
T
-----------
N
K
D
M
Q
I
P
S
K
S
V
S
L
P
I
T
L
I
I
--
D
G
E
------
I
V
R
-----------------------
D
N
-
L
------
K
E
A
G
V
----------------
D
E
----
Q
W
L
K
Q
E
M
K
K
K
N
--
I
D
K
T
E
D
V
L
F
A
E
W
------------------------------------------------
1
HHSearch
77.83
26%
-52
- C5 -
3C6F
1
YETF_BACSU
A:
[16-151]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
G
---
E
----
L
Q
Y
K
V
M
K
K
N
K
I
D
I
-
N
Q
L
Q
S
M
L
R
Q
A
G
-
S
F
S
I
Q
-
E
---
V
E
Y
A
I
------------
M
E
T
-
N
----------
G
M
V
S
-------
V
L
P
-----------
K
S
-------
D
-----------
F
D
K
P
T
NKDMQI
P
S
K
S
V
S
L
P
I
T
---------
L
I
I
--
D
G
E
------
I
V
R
-----------------------
D
N
-
L
------
K
E
A
G
V
----------------
D
E
----
Q
W
L
K
Q
E
M
K
K
K
N
--
I
D
K
T
E
D
V
L
F
A
E
W
-
H
K
N
-
K
P
L
Y
T
V
T
Y
E
Q
S
R
-------------------------------
16
Fugue
72.69
25%
-48
- C5 -
3C6F
1
YETF_BACSU
A:
[16-152]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
V
I
R
--
K
G
---
E
----
L
Q
Y
K
V
M
K
K
N
K
I
D
I
-
N
Q
L
Q
S
M
L
R
Q
A
G
-
S
F
S
I
Q
-
E
---
V
E
Y
A
I
------------
M
E
T
-
N
----------
G
M
V
S
-------
V
L
P
-----------
K
S
-------
D
F
D
K
P
T
NKDMQI
P
S
K
-----------
S
V
S
L
P
I
T
---------
L
I
I
--
D
G
E
------
I
V
R
-----------------------
D
N
-
L
------
K
E
A
G
V
----------------
D
E
----
Q
W
L
K
Q
E
M
K
K
K
N
--
I
D
K
T
E
D
V
L
F
A
E
W
H
K
-
N
-
K
P
L
Y
T
V
T
Y
E
Q
S
R
S
------------------------------
24
Fugue
59.80
19%
22
- C4 -
4IIK
18
SIDD_LEGPH
A:
[1-314]
MRSIITQICNGVLHG
Q
S
Y
Q
SGSNDLDKGN
S
E
I
F
A
S
S
L
F
V
H
L
N
EQ
G
K
E
I
K
D
S
-
D
D
K
I
V
I
G
Y
T
KDG
M
A
F
Q
I
V
V
D
G
F
Y
-
G
C
E
R
Q
A
V
F
S
F
I
-
D
N
Y
V
L
P
L
I
D
N
F
S
L
D
L
T
R
Y
PD
S
K
K
V
T
E
S
L
I
H
T
I
Y
S
L
R
S
K
H
AP
L
-------------------
A
E
F
T
M
S
L
C
V
T
Y
Q
K
D
E
Q
L
F
C
A
G
F
G
I
G
D
T
G
I
A
I
K
R
N
E
G
---
T
----
I
E
Q
L
V
C
H
T
E
V
D
G
F
-
K
D
A
F
D
N
Y
S
S
A
N
-
I
D
L
V
I
-
E
R
N
S
V
F
N
T
K
------------
V
M
P
-
G
D
E
L
V
G
Y
TYVP
P
M
L
E
-------
M
T
E
-----------
K
E
-------
F
-----------
E
V
E
-----------
K
R
I
V
R
H
L
---------
N
L
D
--
P
G
N
FDDKDP
L
F
S
-----------------------
Q
L
-
L
------
Q
V
V
K
S
----------------
K
Q
----
K
Q
L
V
E
Q
A
K
E
T
G
Q
I
Q
R
F
G
D
D
F
T
V
G
R
L
-
V
-
I
P
D
Q
L
L
I
N
Q
L
R
I
H
A
L
S-----------------------------
2
HHSearch
54.14
14%
-121
- C5 -
3C6F
1
YETF_BACSU
A:
[16-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
N
I
---------
V
I
R
--
K
G
E
------
L
Q
Y
-----------------------
K
V
-
M
------
K
K
N
K
I
----------------
D
I
----
N
Q
L
Q
S
M
L
R
Q
A
G
--
S
F
S
I
Q
E
V
E
Y
A
I
M
-
E
T
N
-
G
M
V
S
V
L
P
K
S
D
F
D
-------------------------------
23
Fugue
46.94
14%
36
* C6 *
4OBX
2
COQ5_YEAST
A:
[23-257]
------------------------------------S
V
A
N
R
Y
D
L
M
N
D
V
M
S
L
G
I
H
R
L
W
K
D
H
-----
F
I
N
K
L
D
---
A
-
G
K
R
P
N
S
T
T
P
L
N
-
F
I
D
V
A
G
G
S
G
D
I
A
F
G
L
L
-----
D
H
A
E
S
K
F
G
D
T
E
S
T
M
D
I
V
D
--
I
-------------------
N
P
D
M
L
K
E
G
E
K
R
A
M
E
Q
G
K
Y
F
K
----
D
P
R
V
R
F
L
V
--
S
N
---
G
----
E
K
L
E
E
I
D
S
D
S
K
D
I
-
Y
T
V
S
F
G
I
R
N
F
T
D
I
Q
K
G
L
-
N
---
T
A
Y
R
V
------------
L
K
P
-
G
----------
G
I
F
Y
-------
C
L
E
F
S
K
I
EN
P
L
M
D
F
A
Y
-------
Q
-----------
Q
W
A
-----------
K
V
L
P
V
M
G
---------
S
M
I
--
A
N
D
------
Y
D
S
-----------------------
Y
Q
-
Y
------
L
V
E
S
I
----------------
E
R
FPD
Q
E
T
F
K
S
M
I
E
K
A
G
--
F
K
S
---
A
G
Y
E
S
L
-
T
-
F
-
G
I
C
A
I
H
W
--
G
I
K
V
------------------------------
18
Fugue
46.14
19%
-271
* C5 *
1DTC
-
?
?:
[1-26]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
Q
-----------------------
D
I
-
I
------
S
T
I
G
D
----------------
L
V
----
K
W
I
I
D
T
V
N
K
F
T
--
K
K
----------------------------------------------------------
12
PsiBlast_PDB
41.97
27%
13
- C5 -
4ABL
-
A:
[37-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
I
V
N
S
T
S
N
S
-
F
N
L
K
A
-
G
---
V
S
K
A
I
------------
L
E
C
-
A
----------
G
Q
N
---------
V
E
-----------
R
E
-------
C
-----------
S
Q
Q
-----------
A
Q
Q
R
K
N
D
---------
Y
I
I
T
G
G
G
F
------
L
R
C
-----------------------
K
N
-
I
I
H
V
I
GG
N
D
V
K
S
----------------
S
V
----
S
S
V
L
Q
E
C
E
K
K
N
--
Y
S
S
---------------------------------------------------------
15
PsiBlast_PDB
41.58
25%
-90
- C5 -
3H1D
1
A:
[177-253]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
S
E
D
Y
H
F
-
Y
Q
G
L
V
Y
L
L
E
N
D
-
V
S
T
L
G
Y
D
---
L
T
F
S
T
EVQ
E
F
G
V
A
E
V
R
D
L
K
P
-
N
----------
G
A
N
I
-------
L
V
T
-----------
E
E
-------
N
-----------
K
K
E
-----------
Y
V
H
L
V
C
Q
---------
M
R
M
--
T
G
A
------
I
R
K
-----------------------
Q
-------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
40.13
27%
6
- C5 -
4ABK
1
A:
[37-120]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
I
V
N
S
T
S
N
S
-
F
N
L
K
A
-
G
---
V
S
K
A
I
------------
L
E
C
-
A
----------
G
Q
N
---------
V
E
-----------
R
E
-------
C
-----------
S
Q
Q
-----------
A
Q
Q
R
K
N
D
---------
Y
I
I
T
G
G
G
F
------
L
R
C
-----------------------
K
N
-
I
I
H
V
I
GG
N
D
V
K
S
----------------
S
V
----
S
S
V
L
Q
E
C
E
K
K
N
--
Y
S
S
---------------------------------------------------------
22
Fugue
38.84
14%
28
- C3 -
2MEM
-
SCML2_HUMAN
A:
[350-468]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
H
M
M
S
----
T
V
C
V
Y
V
N
K
--
H
G
---
N
FGPH
L
D
P
K
R
I
Q
Q
L
P
D
H
F
G
P
G
P
V
N
V
V
L
R
R
I
-
V
Q
A
C
V
-
D
---
C
A
L
E
T
------------
K
T
V
-
F
----------
G
Y
L
K
PDNRG
G
E
V
I
T
-----------
A
S
-------
F
-----------
D
G
E
-----------
T
H
S
I
Q
L
P
------------------------
P
V
-----------------------
N
S
-
A
------
S
F
A
L
R
----------------
F
L
----
E
N
F
C
H
S
L
Q
C
D
N
--
L
L
S
S
Q
P
F
S
----------------------------------------------------
25
Fugue
37.12
7%
-17
- C6 -
3CAW
1
?
A:
[3-328]
--------------------------------------------
K
I
S
Y
S
P
Y
-
T
L
K
P
V
A
R
E
-----
G
V
L
L
K
V
E
W
N
D
-
G
L
Y
G
F
A
D
L
H
P
W
-
P
E
L
G
D
L
S
L
E
E
Q
L
S
D
L
R
-----
M
G
R
M
T
T
Q
I
E
Q
S
I
W
L
A
R
R
D
--
A
L
L
R
K
E
KKHVFDG
G
E
K
I
K
N
N
Y
L
L
S
H
F
Q
D
L
K
P
G
F
L
D
G
L
K
N
E
----
G
Y
N
T
V
K
V
K
--
M
G
RD
L
Q
----
K
E
A
D
M
L
T
H
I
A
A
S
G
-
M
R
M
R
L
D
F
N
A
L
G
-
S
W
Q
T
F
-
E
---
K
F
M
V
N
------------
L
P
L
-
T
----------
V
R
P
L
-------
I
E
Y
-----------
V
E
DPFPFD
F
H
-----------
A
W
G
-----------
E
A
R
K
L
A
K
---------
I
A
L
--
D
N
Q
------
Y
D
K
VPWGKIASAPFD
V
I
V
I
K
PAKTD
V
D
K
-
A
------
V
A
Q
C
Q
K
W
N
L
K
L
A
V
T
S
YMDH
P
V
G
V
----
V
H
A
V
G
V
A
M
E
L
K
--
D
K
Y
G
D
M
I
L
E
S
G
C
-
L
-
T
-
H
R
L
Y
Q
M
D
S
F
A
A
E
L
STQGPYLLKNKGTGVGF
D
K
L
L
E
A
L
T
W
Y
QLK
9
HHSearch
36.35
15%
-79
- C5 -
2FI0
-
?
A:
[52-77]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
Q
G
S
K
L
A
G
T
P
M
-
D
K
I
V
R
T
L
E
A
N
G
-
Y
E
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
35.49
25%
-42
- C5 -
3G1N
-
HUWE1_HUMAN
A:
[160-236]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
S
E
D
Y
H
F
-
Y
Q
G
L
V
Y
L
L
E
N
D
-
V
S
T
L
G
Y
D
---
L
T
F
S
T
E
V
Q
E
FG
V
C
E
V
R
D
L
K
P
-
N
----------
G
A
N
I
-------
L
V
T
-----------
E
E
-------
N
-----------
K
K
E
-----------
Y
V
H
L
V
C
Q
---------
M
R
M
--
T
G
A
------
I
R
K
-----------------------
Q
-------------------------------------------------------------------------------------------------------------
3
HHSearch
33.40
14%
-106
- C5 -
2JUG
-
?
A:
[4-77]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
S
A
-
G
A
L
L
A
H
A
A
S
L
G
-
V
R
------------
L
------------
W
V
E
-
G
----------
E
R
L
R
-------
F
Q
A
----------------------------------
P
--------------------------------
P
G
V
------
M
T
P
-----------------------
E
L
-
Q
------
S
R
L
G
G
----------------
A
R
----
H
E
L
I
A
L
L
R
Q
L
Q
--
P
S
S
Q
G
G
S
L
L
A
P
V
-
A
R
N
-
G
R
-----------------------------------------
6
HHSearch
32.26
20%
-156
- C- -
2GUK
-
?
A:
[74-100]
----------------------------------------------------------------------
A
I
R
L
F
V
S
G
R
S
L
N
S
L
T
P
E
E
D
F
I
I
G
A
M
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
29.74
29%
-104
- C5 -
3I4U
7
A:
[109-161]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
-------
L
L
A
-----------
V
Y
-------
N
-----------
S
W
K
-----------
N
N
K
F
S
N
P
---------
W
C
Y
--
E
N
F
------
I
Q
A
-----------------------
R
S
-
L
------
R
R
A
Q
D
----------------
I
R
----
K
Q
M
L
G
I
M
D
R
H
---------------------------------------------------------------
4
HHSearch
28.35
7%
-141
- C2 -
1Q02
-
A:
[13-42]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
Q
M
L
S
M
G
-
F
S
D
E
G
-
G
---
W
L
T
R
L
------------
L
Q
T
K
N
----------
Y
D
I
G
-------
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
20.49
28%
0
- C- -
2AXT
-
PSBI_THEEB
I:
[3-35]
---------------------------------------------
M
E
T
L
K
I
-
T
V
Y
I
V
V
T
F
-----
F
V
L
L
F
V
F
G
F
L
-
S
G
D
P
A
R
N
P
K
R
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
16.66
10%
33
- C5 -
1TR8
-
NAC_METTM
A:
[27-108]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
L
R
-
G
---
V
E
E
V
V
------------
I
K
L
-
K
----------
R
K
E
I
-------
I
I
K
-----------
N
P
-------
K
V
N
V
--------
M
E
F
------------
M
G
Q
K
T
Y
---------
Q
V
T
---
G
K
------
A
R
E
-----------------------
R
S
L
E
------
A
E
M
E
I
----------------
P
E
----
D
D
I
E
L
V
M
N
Q
T
G
--
A
S
-
R
E
D
A
T
R
A
L
Q
-
E
T
G
-
G
D
-----------------------------------------