@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu30570: (2016-07-20 )
MGMPVEFNTLIVTKGKEVRIDENIFTLEKDGYRVYPMEIPMDVRKTKFGEKSGTAEVQKLQWEEGRTIITYKLTSLHSVN
Atome Classification :
(20 SA)
---------------------------------------------------------------------.........10..--------------------......20.........30.---........40........50....-....60...-...--..70........80-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------MGMP
V
E
F
N
T
L
I
V
T--------------------KG
K
E
V
R
I-DE
N
I
F
T
LEKD-G---
Y
R
V
Y
P
M
EIPM
D
V
R
K
TKFGEKSGT
A
-
E
V
Q
K
L
QWEE-G
R
T
--
I
I
T
Y
K
LTSLHSVN--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
84.84
100%
-55
- C4 -
2NWA
1
YTMB_BACSU
A:
[1-80]
---------------------------------------------------------------------
M
G
M
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
83.46
96%
-55
- C4 -
2NWA
1
YTMB_BACSU
A:
[2-80]
----------------------------------------------------------------------
G
M
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_CBE
80.97
97%
-47
- C4 -
2NWA
1
YTMB_BACSU
G:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_CBE
80.74
97%
-45
- C4 -
2NWA
1
YTMB_BACSU
C:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_CBE
80.47
97%
-45
- C4 -
2NWA
1
YTMB_BACSU
E:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_CBE
80.44
97%
-47
- C4 -
2NWA
1
YTMB_BACSU
D:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_CBE
80.07
97%
-51
- C4 -
2NWA
1
YTMB_BACSU
F:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_CBE
79.96
97%
-48
- C4 -
2NWA
1
YTMB_BACSU
B:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_CBE
79.87
97%
-46
- C4 -
2NWA
1
YTMB_BACSU
H:
[4-80]
------------------------------------------------------------------------
P
V
E
F
N
T
L
I
V
T
--------------------
K
G
K
E
V
R
I
-
D
E
N
I
F
T
L
E
K
D
-
G
---
Y
R
V
Y
P
M
E
I
P
M
D
V
R
K
T
K
F
-
E
K
S
G
T
A
-
E
V
Q
K
L
Q
W
E
E
-
G
R
T
--
I
I
T
Y
K
L
T
S
L
H
S
V
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
44.04
50%
-231
- C1 -
2HFR
-
A:
[8-15]
------------------------------------------------------------------------
P
V
A
I
N
T
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
39.22
48%
-129
- C3 -
3MWY
-
CHD1_YEAST
W:
[551-591]
------------------------------------------------------------------------------
L
I
M
S
--------------------
S
G
K
M
V
L
L
-
D
Q
L
L
T
R
L
K
K
D
-
G
---
H
R
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
32.48
27%
-178
- C3 -
1BGF
-
STAT4_MOUSE
A:
[20-34]
------------------------------------------------------------------------------------------------------------------------------
Q
F
Y
D
D
N
F
P
M
E
I
R
H
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
31.23
20%
-0
- C4 -
3F1Z
-
?
A:
[57-99]
------------------------------------------------------------------------------------------------------------------------------------
V
I
V
D
I
R
R
K
S
-
G
I
A
G
S
Y
Y
-
F
I
V
T
M
R
D
E
Q
-
N
K
T
D
K
R
L
T
F
N
F
G
S
H
N
S
A
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
29.70
10%
81
- C4 -
1AON
-
CH10_ECOLI
O:
[1-97]
---------------------------------------------------------------------
M
N
I
R
P
L
H
D
R
V
I
V
K
RKEVETKSAGGIVLTGSAAA
K
S
T
R
G
E
V
-
L
A
V
G
N
G
R
I
L
E
-
N
---
G
E
V
K
P
L
D
V
K
V
G
-
D
I
V
I
F
N
D
G
Y
G
V
K
-
S
E
K
I
----
D
-
N
E
E
--
V
L
I
M
S
E
S
D
I
L
A
I
V
EA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
28.88
16%
24
- C4 -
1PFS
-
G5P_BPPF3
A:
[1-78]
---------------------------------------------------------------------
M
N
I
Q
I
T
F
T
D
S
V
R
Q
G
T
S
A----------------
K
G
N
P
Y
T
F
-
Q
E
G
F
L
H
L
E
D
K
-
P
---
H
P
L
Q
C
Q
F
F
V
E
S
V
I
P
------
A
G
S
Y
-
Q
V
P
Y
R
I
N
V
N
N
G
R
P
--
E
L
A
F
D
F
K
A
M
K
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
25.56
16%
-37
* C4 *
2RO3
-
ABH_BACSU
A:
[1-54]
-------------------------------------------------------------------------------
M
K
S
--------------------
I
G
V
V
R
K
V
-
D
E
L
---------------
G
R
I
V
M
P
I
E
L
R
R
A
L
D
I
A
I
K
D
-----
S
I
E
F
F
V
D
-
G
D
K
--
I
I
L
K
K
Y
K
P
H
G
V
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
24.80
39%
118
- C3 -
2BNE
1
PYRH_ECOLI
A:
[195-237]
--------------------------------------------------------------------------------------------------------
K
E
L
K
V
M
D
L
A
A
F
T
L
A
R
D
-
H
KL
P
I
R
V
F
N
M
N
K
P
G
A
L
R
R
V
V
M
G
E
K
E
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
24.72
20%
54
- C2 -
4RKN
14
MCCA_WOLSU
A:
[43-702]
MQMT
K
E
A
R
E
I
I
A
HPKGTKESRGVIS
L
Q
D
Y
I
V
E
E
Q
A
M
Y
D
W
L
F
K
NHPIFTKYGGKTV
G
K
L
V
V
K
D
RGEEWIE
E
G
R
G
N
D
F
S
K
A
S
K
R
--------------------
S
G
G
E
-
G
F
-
S
S
M
M
Y
R
V
A
R
N
-
S
---
T
L
Q
Y
P
-------
N
K
F
I
G
P
E
K
C
G
E
C
H
P
A
Q
Y
E
T
W
S
R
-
S
R
H
--
A
T
T
I
R
F
P
G
E
H
P
E
V
NNKLNDPVFDKDTASILPQGITPDVVYCTVGHIR
T
K
F
G
F
F
D
AWLLRGT
Y
H
V
E
GGLLKNGT
G
Q
I
V
A
G
GNQWQRTWALNLS
P
E
V
A
K
K
I
K
K
W
V
PDFPVTLEEYGDNGGYVRG
L
A
S
Y
AAKYKKSMSFQASTSYCEVCH
P
W
K
F
DFKN
E
S
E
F
Y
A
A
LGN
A
K
E
L
Q
K
H
TISKGVS
C
E
E
C
H
GAGGHLEGGS
G
L
L
I
S
NCERCHQR
F
S
Y
S
P
D
L
M
R
N
N
PLNAGKPDLALSSKFKSM
G
P
G
C
GS
E
G
S
Q
T
Y
FT
A
H
Y
E
K
GMRCATCHDPHDVTGN
V
T
G
E
KGIKGVSYNSEQGYLSSL
Y
S
K
P
KLKKE
C
T
D
C
H
K
E
Q
A
Y
I
Q
S
KADTHSKNSCASCHMPFMMSCENFYAIQFQDQAGFDTQRRAHIW
K
I
D
V
D
PARKS
L
V
A
G
STSKDPRDGKD
W
H
F
E
R
N
EEG
R
N
F
V
D
LMWA
C
A
R
T
T
WAD
K
D
Q
A
E
A
KGCHSPVVSELKETLHFKD
Q
K
Q
V
Y
N
E
V
M
G
W
Q
T
P
V
K
D
K
F
T
Q
V
K
V
G
I
Q
G
L
Y
S
L
LEVKKLA
P
S
D
K
T
R
V
Y
E
L
I
E
K
A
Q
D
T
V
D
L
I
E
K
D
GSWGMHG
F
K
Y
T
K
Q
R
L
D
A
A
V
E
Y
I
N
E
A
Q
R
I
M
K
K
S
L
4
PsiBlast_PDB
23.96
39%
118
- C3 -
2BND
-
PYRH_ECOLI
A:
[195-237]
--------------------------------------------------------------------------------------------------------
K
E
L
K
V
M
D
L
A
A
F
T
L
A
R
D
-
H
KL
P
I
R
V
F
N
M
N
K
P
G
A
L
R
R
V
V
M
G
E
K
E
G
T
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
23.54
24%
83
- C6 -
2RD1
-
?
A:
[32-58]
-----------------------------------------------------------------------------
Q
T
I
V
T
--------------------
Q
G
K
P
Q
L
D
K
E
T
G
M
T
S
Y
T
D
Q
E
G
---
N
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------