@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu35870: (2016-07-30 )
MKFVKAIWPFVAVAIVFMFMSAFKFNDQLTDQEKQKIDMEMNKIQQQEEPVNANK
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......----.20...-..-...30........40........50....--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
F
V
K
A
I
W
P
F
V
A
V
A
I
V
F
M
----
F
M
S
A
F
K-FN-DQLT
D
Q
E
K
Q
K
I
D
M
E
M
N
K
I
Q
Q
Q
EEPVNANK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
69.84
20%
112
- C4 -
1QF6
-
SYT_ECOLI
A:
[63-242]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KD
E
E
G
L
E
I
I
R
H
S
C
A
H
L
L
G
H
A
I
K
Q
L
W
P
H
T
K
M
A
I
G
P
V
I
DN
G
F
Y
Y
D
V
D
-
L
D
-
R
T
L
T
Q
E
D
V
E
A
L
E
K
R
M
H
E
L
A
E
K
N
Y
D
V
I
K
K
K
V
S
W
H
E
A
R
E
T
F
A
N
R
GE
S
Y
K
V
S
I
L
DENIAHDDK
P
G
L
Y
F
HEE
Y
V
D
M
C
R
G
PHVPNMRFCH
H
F
K
L
M
K
T
A
G
A
Y
WRGDSN
N
K
M
L
Q
R
I
Y
G
T
A
W
AD
K
K
A
L
N
A
Y
L
Q
R
L
E
E
A
A
K
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
54.93
18%
120
- C4 -
2P8Q
-
SPN1_HUMAN
B:
[26-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
----
R
L
S
Q
Y
K
-
S
K
Y
S
S
L
E
Q
S
E
R
R
R
R
L
L
E
L
Q
K
S
K
R
L
D
Y
V
N
H
A
R
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
48.72
26%
76
- C4 -
2LMF
-
A:
[1-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
-
G
D
F
F
R
K
S
K
E
K
I
G
K
E
F
K
R
I
V
Q
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.64
16%
-
* C4 *
4H7R
4
?
A:
[4-31]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
E
-
I
K
A
I
A
Q
E
I
K
A
I
A
K
E
I
K
A
I
A
W
E
I
K
A
I
A
Q
G
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
47.41
19%
-62
- C- -
4MQV
-
SMAL1_HUMAN
B:
[5-30]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
T
E
E
Q
R
K
K
I
E
E
N
R
Q
K
A
L
A
R
R
A
E
K
L
L
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
45.58
30%
-254
- C4 -
2LX0
-
?
A:
[4-23]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
W
E
V
I
A
G
L
V
A
L
L
----
T
F
L
A
F
G
-
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
44.87
13%
-40
- C4 -
1TKE
-
SYT_ECOLI
A:
[110-132]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
T
L
T
Q
E
D
V
E
A
L
E
K
R
M
H
E
L
A
E
K
N
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
44.18
9%
-60
- C4 -
4GYD
1
CYC6_NOSS1
A:
[61-83]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
K
-
G
R
L
K
P
E
Q
I
E
D
V
A
A
Y
V
L
G
K
A
D
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
43.58
27%
-
- C4 -
2L5G
-
NCOR2_HUMAN
B:
[175-189]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
M
D
R
V
D
R
E
I
T
M
V
E
Q
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
43.22
18%
48
- C4 -
2PRG
-
NCOA1_HUMAN
C:
[628-703]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
S
H
K
-
L
V
-
Q
L
L
T
T
T
E
R
H
K
I
L
H
R
L
L
Q
E
G
S
P
S
D
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
42.94
64%
-67
- C1 -
2HFR
-
A:
[1-11]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
F
W
P
L
V
P
V
A
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
42.30
27%
-431
- C4 -
2RDD
-
YAJC_ECOLI
B:
[7-21]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
L
V
V
F
G
L
I
F
Y
----
F
M
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
41.20
8%
69
- C- -
2IVY
-
CAS2A_SULSO
A:
[2-89]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
M
L
Y
L
I
F
Y
D
I
TD
D
N
L
R
N
R
V
A
E
F
L
K
K
K
G
L
D
R
I
Q
Y
S
---------
V
-
F
M
-
G
D
L
N
S
S
R
L
K
D
V
E
A
G
L
K
I
I
G
N
R
K
K
L
Q
E
D
E
R
F
F
I
L
I
V
P
I
T
E
N
Q
F
R
E
R
I
V
I
G
YS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.84
17%
-275
- C4 -
2LS3
-
A:
[1-29]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
L
L
Q
T
V
L
H
I
I
Q
V
V
I
S
Y
F
----
L
M
L
I
F
M
T
Y
N
-
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
40.13
8%
-29
- C4 -
2M7G
-
?
A:
[10-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
I
I
G
I
L
A
----
A
I
A
I
P
Q
-
F
S
-
A
Y
R
V
K
A
Y
N
S
A
A
S
S
D
L
R
N
L
K
T
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
40.12
4%
-86
- C4 -
3B64
-
?
A:
[5-28]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
F
-
V
S
-
T
P
L
D
H
H
K
R
E
N
L
A
Q
V
Y
R
A
V
T
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
39.04
16%
0
- C- -
1JB0
13
PSAA_THEEB
A:
[13-755]
R
V
V
V
D
N
DPVPTSF
E
K
W
A
K
PGHFDRTLARGPQTT
T
W
I
W
N
L
H
A
L
A
HDFDTHTSD
L
E
D
I
S
R
K
I
F
S
A
H
F
G
H
L
A
V
V
F
I
W
L
S
G
M
Y
F
H
G
A
KFSN
Y
E
A
W
L
A
D
P
TG
I
K
P
S
A
Q
VVWPIVGQGILNGDVGGGFHGIQITSG
L
F
Q
L
W
R
A
S
GITN
E
F
Q
L
Y
C
T
A
I
G
G
L
V
M
A
G
L
M
L
F
A
G
W
F
H
Y
HK
R
A
P
K
L
E
W
F
Q
N
V
E
S
M
L
N
H
H
L
AG
L
L
G
L
G
S
L
A
W
A
G
H
Q
I
H
V
S
L
P
I
N
K
L
L
D
A
GVAAKDIPL
P
H
E
F
I
L
N
P
S
L
M
A
E
L
YPKVDWGFFSPFFTFNWAAYSDFLTFNGGLNPVTGGLW
L
S
D
T
A
H
H
H
L
A
I
A
V
L
F
I
I
A
G
H
MYRTNWGIGHS
L
K
E
I
L
E
A
HKGPFTGAGHKG
L
Y
E
V
L
T
T
S
W
H
A
Q
L
A
I
N
L
A
M
M
G
S
L
S
I
I
V
A
Q
H
M
Y
A
M
PPYPYLATD
Y
P
T
Q
L
S
L
F
T
H
H
M
W
I
G
G
F
L
V
V
G
G
A
A
H
G
A
I
F
M
V
RDYDPAMNQNN
V
L
D
R
V
L
R
H
R
D
A
I
I
S
H
L
N
W
V
C
I
F
L
G
F
H
----
S
F
G
L
Y
V
-
H
N
-
D
T
M
R
A
F
G
R
P
Q
D
M
F
S
D
T
G
I
Q
L
--
Q
P
V
F
A
Q
W
V
Q
N
L
H
T
L
APGGTAPNAAATASVAFG
G
D
V
V
A
V
GGKVAM
M
P
I
V
L
G
T
A
D
F
M
V
H
H
I
H
A
F
T
I
H
V
T
V
L
I
L
L
K
G
V
L
F
A
RSSRLIPDKANLGFRFPCDGPGRGGTCQVS
G
W
D
H
V
F
L
G
L
F
W
M
Y
N
C
I
S
V
V
I
F
H
F
S
W
K
M
Q
S
D
V
W
G
T
V
A
PDG
T
V
S
H
ITGGN
F
A
Q
S
A
IT
I
N
G
W
L
RDF
L
W
A
Q
A
SQVIGSYGSAL
S
A
Y
G
L
L
F
L
G
A
H
F
I
W
A
F
S
L
M
F
L
F
S
G
R
G
Y
W
Q
E
L
I
E
S
I
V
W
A
H
N
K
L
KVAPAI
Q
P
R
A
L
S
I
I
Q
G
R
A
V
G
V
A
H
Y
L
L
G
G
I
A
T
T
W
A
F
F
L
A
R
I
ISVG
8
HHSearch
38.91
10%
-434
- C4 -
1OQW
-
FMPA_PSEAI
A:
[9-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
V
A
I
I
G
I
L
A
----
A
I
A
I
P
Q
-
Y
Q
-
N
Y
V
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.67
6%
-41
- C4 -
2HI2
-
FMM1_NEIGO
A:
[10-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
I
V
G
I
L
A
----
A
V
A
L
P
A
-
Y
Q
-
D
Y
T
A
R
A
Q
V
S
E
A
I
L
L
A
E
G
Q
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
38.00
4%
-153
- C4 -
4LHP
-
?
A:
[4-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
D
-
L
T
-
S
D
R
S
R
E
Q
R
R
A
I
A
D
A
V
H
D
A
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------