@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0228: (2016-03-13 )
MSNENHEELNDQLIVRREKVDTLREEGIDPFGEKFIRSISPEEIETKFADKSKEELEEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYIRKDAIGEDAYAVFKLADLGDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHGLKDVEQRYRQRYLDLITNEESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFITHHNALDMELYLRIALELHLKRLIVGGMDKVYEIGRVFRNEGTSTRHNPEFTMLESYAAYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYKVDLTPNWRRIHMADAVKEYVGVDFWNVTSDEEARELAKKHDVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISPLAKKNKEDERFTDRFELFIVGREHANAFSELNDPIDQRERFEAQMKEREQGNDEAHGMDADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMKHRD

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAD_B_2(1E1T)
SYK2_ECOLI
[Raw transfer]



LAD_A_2(4UP7)
?
[Raw transfer]



ATP_A_3(1E24)
SYK2_ECOLI
[Raw transfer]



ACP_A_3(1E22)
SYK2_ECOLI
[Raw transfer]



KAA_C_7(3A5Y)
EPMA_ECOLI
[Raw transfer]



ANP_A_2(4UPA)
?
[Raw transfer]



ATP_A_2(4UP9)
?
[Raw transfer]



GOL_B_9(1E1T)
SYK2_ECOLI
[Raw transfer]



GOL_B_11(1E1O)
SYK2_ECOLI
[Raw transfer]



KRS_A_4(4YCU)
SYK_HUMAN
[Raw transfer]



LYS_B_4(4EX5)
SYK_BURTA
[Raw transfer]



LYS_A_3(4EX5)
SYK_BURTA
[Raw transfer]



KRS_B_8(4YCU)
SYK_HUMAN
[Raw transfer]



LYS_B_3(1E1O)
SYK2_ECOLI
[Raw transfer]



LYS_B_3(1E1O)
SYK2_ECOLI
[Raw transfer]



LYS_C_3(1BBU)
SYK1_ECOLI
[Raw transfer]
27 PsiBlast_CBE 98.5770% -89 - C7 -3A74 - SYK_GEOSE -
24 PsiBlast_CBE 98.5470% -87 - C7 -3E9H - SYK_GEOSE -
29 PsiBlast_CBE 98.4370% -89 - C7 -3A74 - SYK_GEOSE -
22 PsiBlast_CBE 98.0670% -89 - C7 -3E9I - SYK_GEOSE -
28 PsiBlast_CBE 97.9970% -88 - C7 -3A74 - SYK_GEOSE -
3 PsiBlast_PDB 97.9570% -89 - C7 -3A74 - SYK_GEOSE -
71 HHSearch 97.8570% -89 - C7 -3A74 - SYK_GEOSE -
2 PsiBlast_PDB 97.8270% -87 - C7 -3E9I - SYK_GEOSE -
1 PsiBlast_PDB 97.6470% -89 - C7 -3E9H - SYK_GEOSE -
21 PsiBlast_CBE 97.5870% -89 - C7 -3E9I - SYK_GEOSE -
26 PsiBlast_CBE 97.3670% -87 - C7 -3E9H - SYK_GEOSE -
25 PsiBlast_CBE 97.1770% -89 - C7 -3E9H - SYK_GEOSE -
23 PsiBlast_CBE 96.0470% -86 - C7 -3E9I - SYK_GEOSE -
60 Fugue 89.8351% -81 - C7 -1LYL - SYK2_ECOLI -
30 PsiBlast_CBE 89.7751% -82 - C7 -1LYL - SYK2_ECOLI -
31 PsiBlast_CBE 89.7351% -82 - C7 -1LYL - SYK2_ECOLI -
9 PsiBlast_PDB 89.2451% -80 - C7 -1BBU 2.7 SYK1_ECOLI
4 PsiBlast_PDB 89.0251% -80 - C7 -1LYL - SYK2_ECOLI -
5 PsiBlast_PDB 88.8751% -81 - C7 -1E1O 3.3 SYK2_ECOLI
8 PsiBlast_PDB 88.5251% -81 - C7 -1E24 7.0 SYK2_ECOLI
7 PsiBlast_PDB 88.5251% -80 - C7 -1E22 7.1 SYK2_ECOLI
70 HHSearch 88.4651% -79 - C7 -1E1O 3.3 SYK2_ECOLI
11 PsiBlast_PDB 87.6749% -83 - C7 -4EX5 3.2 SYK_BURTA
6 PsiBlast_PDB 87.5851% -79 - C7 -1E1T 8.6 SYK2_ECOLI
32 PsiBlast_CBE 86.6249% -82 - C7 -4EX5 3.1 SYK_BURTA
15 PsiBlast_PDB 83.3743% -75 - C7 -4YCU 6.2 SYK_HUMAN
39 PsiBlast_CBE 83.3043% -75 - C7 -4YCU 6.6 SYK_HUMAN
20 PsiBlast_PDB 73.6736% -75 - C7 -4UPA 6.1 ?
19 PsiBlast_PDB 72.9336% -73 - C7 -4UP9 5.4 ?
52 PsiBlast_CBE 72.2236% -68 - C7 -4UP7 7.5 ?
57 PsiBlast_CBE 54.5432% -62 - C7 -3A5Y 9.0 EPMA_ECOLI