@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0288: (2016-03-14 )
MHKMRFFQSVQFKLVIMYLLLIIVAMQVIGAYFVRELEGQLEKNFQDSITNSITLLDYNAREEIIKNSDNSVKLQNDIRELLVDYSRASSNLIEVRIVDDKGKILGTSNLNNQGIVGQKSNDPLVKRTLSLGTTSEDKIYKDESNKNNRVWVNVSSIKNKGQVIGAIYLVADIESVYKQVDDITNIFITGTLIAMIITAVLGILLSRTITKPIVEMKRQAYAMARGNYSRKVKVYGVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMTDGVIATDRRGKVILINTPAEKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLTMDRSTLDKPYVLRANFSVIQRETGFNNGVIAVLHDITDQEKVDQERRDFVSNVSHELRTPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQLEKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNANKYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTGLGLAIAREVIEAHGGRIWAERNKNKGTIIKFTLPYSDLPEDDWE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ANP_B_7(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_3(4BIV)
CPXA_ECOLI
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]
1 PsiBlast_PDB 87.5045% -58 - C4 -4I5S - ? -
87 Fugue 86.6144% -59 - C4 -4I5S - ? -
3 PsiBlast_PDB 86.3453% -81 - C3 -4U7O 9.3 ?
2 PsiBlast_PDB 79.7953% -87 - C3 -4U7N - ? -
21 PsiBlast_CBE 78.8853% -73 - C3 -4U7O 9.7 ?
18 PsiBlast_PDB 73.1725% -78 - C3 -3A0R - ? -
4 PsiBlast_PDB 68.2654% -87 - C3 -3SL2 7.8
73 HHSearch 67.8854% -82 - C3 -3SL2 7.8
65 HHSearch 67.7725% -72 - C3 -3A0R - ? -
13 PsiBlast_PDB 65.4933% -51 - C3 -4BIX 5.5 CPXA_ECOLI
10 PsiBlast_PDB 65.3429% -58 - C3 -4Q20 - DIVL_CAUCR -
8 PsiBlast_PDB 64.7333% -46 - C3 -4JAS - ? -
6 PsiBlast_PDB 64.7034% -44 - C3 -4JAV - ? -
22 PsiBlast_CBE 64.1834% -47 - C3 -4JAV - ? -
12 PsiBlast_PDB 63.9433% -41 - C3 -4BIW 7.9 CPXA_ECOLI
5 PsiBlast_PDB 63.7334% -41 - C3 -3DGE - ? -
23 PsiBlast_CBE 63.7034% -45 - C3 -3DGE - ? -
67 HHSearch 63.4432% -63 - C- -2C2A - ? -
17 PsiBlast_PDB 63.1032% -45 - C3 -4CB0 6.7 CPXA_ECOLI
15 PsiBlast_PDB 62.9832% -45 - C3 -4BIZ - CPXA_ECOLI -
31 PsiBlast_CBE 62.1633% -46 - C3 -4BIW 7.6 CPXA_ECOLI
16 PsiBlast_PDB 61.5432% -42 - C3 -4BIV 5.9 CPXA_ECOLI