@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1404: (2016-03-24 )
MAKHIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVIDILVEEAGLNKITIIDNGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALPSIASVSHLAMETSTGETKGTSISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKYLKSLPTELGNITDILNRLALAHPDISFRFSHNGKPLLQTNGNGDLRQVIAAIYGISIAKKSIPVKAESLDFKISGYAVLPEVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLLPIGRFPIIVLQIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKEAFHKLQLIPEGEISKKQKEVQKSEQIQMSFEENKPAKEIPTLFSKPTIPEYVPSDEDAPREDDFILETMPPYEPQAEQEEHSKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEFYREKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAHPTWFPKDQEEEMLREIIDEALSAPSISIHKLREDTAIMMSCKKSIKANHYLTTQDMEALLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKRVM

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_4(1NHJ)
MUTL_ECOLI
[Raw transfer]



ANP_A_9(1NHH)
MUTL_ECOLI
[Raw transfer]



ANP_A_6(1NHI)
MUTL_ECOLI
[Raw transfer]



ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]



ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]



ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]



ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]



ANP_A_5(1B63)
MUTL_ECOLI
[Raw transfer]



SAP_A_4(1H7U)
PMS2_HUMAN
[Raw transfer]
31 HHSearch 92.6540% -84 - C3 -1B63 10.1 MUTL_ECOLI
51 Fugue 91.9339% -87 - C3 -1B63 10.1 MUTL_ECOLI
7 PsiBlast_PDB 91.4140% -81 - C3 -1NHJ 10.3 MUTL_ECOLI
12 PsiBlast_PDB 90.7740% -85 - C3 -1NHI 10.2 MUTL_ECOLI
10 PsiBlast_PDB 90.2040% -82 - C3 -1B63 10.1 MUTL_ECOLI
11 PsiBlast_PDB 88.2340% -82 - C3 -1NHH 10.1 MUTL_ECOLI
8 PsiBlast_PDB 85.0440% -66 - C- -1B62 - MUTL_ECOLI -
33 HHSearch 83.8628% -91 * C3 *3H4L - PMS1_YEAST -
4 PsiBlast_PDB 83.3241% -80 - C3 -5AKB - ? -
6 PsiBlast_PDB 82.1441% -84 - C3 -5AKD - ? -
5 PsiBlast_PDB 80.4641% -76 - C3 -5AKC - ? -
15 PsiBlast_PDB 80.2328% -93 - C3 -3H4L - PMS1_YEAST -
13 PsiBlast_PDB 79.9732% -96 - C3 -1H7U 4.2 PMS2_HUMAN
1 PsiBlast_PDB 75.1064% -96 - C4 -3GAB - MUTL_BACSU -
9 PsiBlast_PDB 73.8140% -79 - C3 -1BKN - MUTL_ECOLI -
21 PsiBlast_CBE 72.2364% -94 - C4 -3KDK - -
3 PsiBlast_PDB 71.8064% -93 - C4 -3KDK - MUTL_BACSU -
34 HHSearch 69.9565% -95 - C4 -3KDG - MUTL_BACSU -
2 PsiBlast_PDB 69.9564% -95 - C4 -3KDG - MUTL_BACSU -
52 Fugue 69.5463% -94 * C4 *3KDG - MUTL_BACSU -
55 Fugue 64.4248% -39 - C3 -1B63 9.6 MUTL_ECOLI
53 Fugue 63.5545% -55 - C3 -1B63 9.7 MUTL_ECOLI