@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1565: (2016-03-26 )
VNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNVLEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQIIDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKELAILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEMNFTTLLKNIEGDTPEESKELKELSFEIVTELKEQHFGGKTALYVELENDNYHTANFIGLTVHSSQGTYFFTKETAESSEAFRKWVESDQTKVVYDAKKTIVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHDYTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEFNINSPKQLGVILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVELSVPLKVDSAFGDTWYDAK

Atome Classification :

(93 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_F_4(1LV5)
DPO1_GEOSE
[Raw transfer]
-
DCT_A_11(4N5S)
DPO1_THEAQ
[Raw transfer]



DDS_A_6(1QSY)
DPO1_THEAQ
[Raw transfer]



TTP_A_9(1NJY)
DPO1_GEOSE
[Raw transfer]



DCP_B_2(5KTQ)
DPO1_THEAQ
[Raw transfer]



DCT_A_5(2KTQ)
DPO1_THEAQ
[Raw transfer]



GOL_A_5(4DSI)
?
[Raw transfer]



GOL_A_5(4DWI)
?
[Raw transfer]



NACID_F_6(3PV8)
?
[Raw transfer]
-
NACID_F_6(3PX0)
?
[Raw transfer]
-
NACID_F_6(4F3O)
?
[Raw transfer]
-
NACID_F_6(4F8R)
?
[Raw transfer]
-
NACID_F_6(4DS5)
?
[Raw transfer]
-
NACID_F_6(3PX6)
?
[Raw transfer]
-
NACID_F_6(4F4K)
?
[Raw transfer]
-
NACID_F_6(4DQQ)
?
[Raw transfer]
-
NACID_F_6(3TI0)
?
[Raw transfer]
-
NACID_F_6(4EZ6)
?
[Raw transfer]
-
NACID_F_6(3PX4)
?
[Raw transfer]
-
NACID_F_6(4DSF)
?
[Raw transfer]
-
NACID_F_6(4DQI)
?
[Raw transfer]
-
NACID_F_6(4DQR)
?
[Raw transfer]
-
NACID_F_6(4F2S)
?
[Raw transfer]
-
NACID_F_6(4DS4)
?
[Raw transfer]
-
NACID_F_6(4DSE)
?
[Raw transfer]
-
NACID_F_6(3THV)
?
[Raw transfer]
-
NACID_F_6(4EZ9)
?
[Raw transfer]
-
NACID_F_6(4F2R)
?
[Raw transfer]
-
NACID_F_6(4DQP)
?
[Raw transfer]
-
NACID_C_3(4B9T)
?
[Raw transfer]
-
SUC_A_5(1NKB)
DPO1_GEOSE
[Raw transfer]



SUC_A_6(1NJX)
DPO1_GEOSE
[Raw transfer]



NACID_C_3(4DSL)
?
[Raw transfer]
-
AF_C_7(1UA0)
?
[Raw transfer]



CHAIN_C_2(1U47)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NKB)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NK6)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1U48)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NKC)
DPO1_GEOSE
[Raw transfer]
-
NACID_P_1(3BDP)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1U4B)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(1L5U)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1U45)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_4(3HT3)
?
[Raw transfer]
-
AF_C_7(1UA1)
DPO1_GEOSE
[Raw transfer]



CHAIN_C_2(1U49)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NK5)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NJX)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_3(2XO7)
?
[Raw transfer]
-
MES_I_9(1NK0)
DPO1_GEOSE
[Raw transfer]



CHAIN_C_2(1NK4)
DPO1_GEOSE
[Raw transfer]
-
NACID_F_2(2HHW)
?
[Raw transfer]
-
NACID_C_3(4UQG)
?
[Raw transfer]
-
NACID_C_3(2Y1I)
?
[Raw transfer]
-
NACID_C_2(1L3V)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(4N56)
DPO1_THEAQ
[Raw transfer]
-
CHAIN_C_2(1NK7)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1XC9)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_3(4B9V)
?
[Raw transfer]
-
NACID_T_2(2BDP)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_3(4B9N)
?
[Raw transfer]
-
NACID_F_6(3HT3)
?
[Raw transfer]
-
NACID_C_3(2Y1J)
?
[Raw transfer]
-
NACID_C_4(3EZ5)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NJZ)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NKE)
DPO1_GEOSE
[Raw transfer]
-
NACID_F_4(1LV5)
DPO1_GEOSE
[Raw transfer]
-
NACID_D_2(2KTQ)
DPO1_THEAQ
[Raw transfer]
-
BAP_C_10(1XC9)
DPO1_GEOSE
[Raw transfer]



NACID_C_2(4KTQ)
DPO1_THEAQ
[Raw transfer]
-
NACID_F_6(3EZ5)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(2HVI)
?
[Raw transfer]
-
NACID_F_4(2HVI)
?
[Raw transfer]
-
NACID_C_3(4O0I)
?
[Raw transfer]
-
CHAIN_C_2(1NJY)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(1L3S)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1UA0)
?
[Raw transfer]
-
CHAIN_C_2(1NJW)
?
[Raw transfer]
-
CHAIN_B_2(4DSI)
?
[Raw transfer]
-
NACID_C_2(1L3U)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_4(2HHW)
?
[Raw transfer]
-
CHAIN_C_3(4DSJ)
?
[Raw transfer]
-
NACID_P_2(4XVK)
DPOLN_HUMAN
[Raw transfer]
-
NACID_F_4(2HVH)
?
[Raw transfer]
-
NACID_C_2(1L3T)
DPO1_GEOSE
[Raw transfer]
-
NACID_T_2(4BDP)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_3(4B9S)
?
[Raw transfer]
-
NACID_D_2(1LV5)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_3(4B9U)
?
[Raw transfer]
-
CHAIN_C_2(1NK9)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(1NK8)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(1QSY)
DPO1_THEAQ
[Raw transfer]
-
CHAIN_C_2(1NK0)
DPO1_GEOSE
[Raw transfer]
-
CHAIN_C_2(4XIU)
DPO1_THEAQ
[Raw transfer]
-
CHAIN_E_5(4DSJ)
?
[Raw transfer]
-
NACID_C_2(4DSK)
?
[Raw transfer]
-
NACID_C_3(3EYZ)
DPO1_GEOSE
[Raw transfer]
-
NACID_C_2(2HVH)
?
[Raw transfer]
-
NACID_C_2(4N5S)
DPO1_THEAQ
[Raw transfer]
-
NACID_C_3(4DWI)
?
[Raw transfer]
-
CHAIN_C_2(1UA1)
DPO1_GEOSE
[Raw transfer]
-
NACID_F_4(4X0Q)
DPOLQ_HUMAN
[Raw transfer]
-
93 PsiBlast_CBE 95.7461% -93 - C4 -3HT3 16.9 ?
92 PsiBlast_CBE 95.5661% -92 - C4 -3HT3 17.5 ?
75 PsiBlast_CBE 95.5661% -94 - C4 -1L5U 12.7 DPO1_GEOSE
10 PsiBlast_PDB 95.5261% -96 - C4 -2XY6 - ? -
62 PsiBlast_CBE 95.4561% -92 - C4 -1NKC 8.6 DPO1_GEOSE
46 PsiBlast_CBE 95.3961% -94 - C4 -1U4B 10.7 DPO1_GEOSE
18 PsiBlast_PDB 95.3861% -95 - C4 -4UQG 9.9 ?
63 PsiBlast_CBE 95.3761% -94 - C4 -1NKB 12.1 DPO1_GEOSE
3 PsiBlast_PDB 95.3661% -93 - C4 -2HHT - ? -
71 PsiBlast_CBE 95.3561% -93 - C4 -1NJZ 9.8 DPO1_GEOSE
61 PsiBlast_CBE 95.3061% -94 - C4 -1NKE 7.0 DPO1_GEOSE
5 PsiBlast_PDB 95.3061% -93 - C4 -2HHV - ? -
79 PsiBlast_CBE 95.2961% -93 - C4 -1L3S 18.1 DPO1_GEOSE
90 PsiBlast_CBE 95.2761% -95 - C4 -2Y1J 9.4 ?
14 PsiBlast_PDB 95.2861% -93 - C4 -4B9S 12.2 ?
76 PsiBlast_CBE 95.2661% -94 - C4 -1L3V 8.2 DPO1_GEOSE
7 PsiBlast_PDB 95.2661% -95 - C4 -2HW3 - ? -
84 PsiBlast_CBE 95.1961% -92 - C4 -4BDP 13.4 DPO1_GEOSE
40 PsiBlast_CBE 95.1660% -94 - C4 -4DQR Error ?
68 PsiBlast_CBE 95.1561% -93 - C4 -1NK5 13.0 DPO1_GEOSE
50 PsiBlast_CBE 95.1261% -94 - C4 -1U45 16.0 DPO1_GEOSE
72 PsiBlast_CBE 95.0861% -94 - C4 -1NJY 13.0 DPO1_GEOSE
64 PsiBlast_CBE 94.9961% -93 - C4 -1NK9 6.1 DPO1_GEOSE
53 PsiBlast_CBE 94.9861% -93 - C4 -3EZ5 17.6 DPO1_GEOSE
31 PsiBlast_CBE 94.9860% -94 - C4 -4EZ6 Error ?
16 PsiBlast_PDB 94.9761% -94 - C4 -4B9U 7.7 ?
85 PsiBlast_CBE 94.9561% -93 - C4 -3BDP 8.3 DPO1_GEOSE
51 PsiBlast_CBE 94.9561% -95 - C4 -4DWI 10.0 ?
48 PsiBlast_CBE 94.9461% -93 - C4 -1U48 12.2 DPO1_GEOSE
78 PsiBlast_CBE 94.9161% -93 - C4 -1L3T 12.5 DPO1_GEOSE
29 PsiBlast_CBE 94.8760% -95 - C4 -4F2R Error ?
86 PsiBlast_CBE 94.8061% -94 - C4 -2BDP 14.3 DPO1_GEOSE
42 PsiBlast_CBE 94.8161% -94 - C4 -1LV5 11.7 DPO1_GEOSE
47 PsiBlast_CBE 94.8061% -92 - C4 -1U49 9.1 DPO1_GEOSE
28 PsiBlast_CBE 94.8060% -94 - C4 -4F2S Error ?
15 PsiBlast_PDB 94.8061% -94 - C4 -4B9T 6.8 ?
77 PsiBlast_CBE 94.7761% -92 - C4 -1L3U 12.9 DPO1_GEOSE
66 PsiBlast_CBE 94.7161% -92 - C4 -1NK7 10.3 DPO1_GEOSE
49 PsiBlast_CBE 94.7061% -92 - C4 -1U47 5.2 DPO1_GEOSE
44 PsiBlast_CBE 94.7061% -93 - C4 -1UA1 7.5 DPO1_GEOSE
23 PsiBlast_CBE 94.6960% -95 - C4 -4DQP Error ?
17 PsiBlast_PDB 94.6861% -93 - C4 -4B9V 6.6 ?
52 PsiBlast_CBE 94.6461% -93 - C4 -4DSI 13.7 ?
81 PsiBlast_CBE 94.5461% -97 - C4 -4DSK 14.8 ?
65 PsiBlast_CBE 94.5261% -92 - C4 -1NK8 8.9 DPO1_GEOSE
54 PsiBlast_CBE 94.5161% -92 - C4 -3EZ5 17.8 DPO1_GEOSE
67 PsiBlast_CBE 94.5061% -91 - C4 -1NK6 8.5 DPO1_GEOSE
24 PsiBlast_CBE 94.5060% -92 - C4 -4DQI Error ?
19 PsiBlast_PDB 94.4861% -92 - C4 -1LV5 Error DPO1_GEOSE
41 PsiBlast_CBE 94.4660% -94 - C4 -4DQQ Error ?
80 PsiBlast_CBE 94.4561% -92 - C4 -4DSL 10.8 ?
37 PsiBlast_CBE 94.3960% -94 - C4 -3PX4 Error ?
43 PsiBlast_CBE 94.3861% -94 - C4 -4O0I 6.4 ?
56 PsiBlast_CBE 94.3761% -91 - C4 -2HVI 18.1 ?
45 PsiBlast_CBE 94.3461% -93 - C4 -1UA0 13.9 ?
89 PsiBlast_CBE 94.3361% -91 - C4 -2HHW 17.5 ?
26 PsiBlast_CBE 94.3260% -92 - C4 -4F4K Error ?
20 PsiBlast_PDB 94.3161% -93 - C4 -2XO7 11.9 ?
91 PsiBlast_CBE 94.3061% -94 * C4 *2Y1I 9.0 ?
87 PsiBlast_CBE 94.2861% -93 - C4 -3EYZ 14.5 DPO1_GEOSE
58 PsiBlast_CBE 94.2961% -96 - C4 -2HVH 15.2 ?
34 PsiBlast_CBE 94.2860% -91 - C4 -3TI0 Error ?
32 PsiBlast_CBE 94.2860% -93 - C4 -4DSF Error ?
69 PsiBlast_CBE 94.1961% -91 - C4 -1NK4 8.1 DPO1_GEOSE
30 PsiBlast_CBE 94.1760% -93 - C4 -4EZ9 Error ?
38 PsiBlast_CBE 94.1660% -93 - C4 -3PX0 Error ?
74 PsiBlast_CBE 94.1461% -90 - C4 -1NJW 6.3 ?
27 PsiBlast_CBE 94.1360% -94 - C4 -4F3O Error ?
13 PsiBlast_PDB 94.1361% -91 - C4 -4B9N 7.4 ?
39 PsiBlast_CBE 94.1160% -91 - C4 -3PV8 Error ?
35 PsiBlast_CBE 94.0860% -91 - C4 -3THV Error ?
60 PsiBlast_CBE 94.0461% -91 - C4 -1XC9 7.4 DPO1_GEOSE
36 PsiBlast_CBE 94.0460% -92 - C4 -3PX6 Error ?
70 PsiBlast_CBE 93.9961% -91 - C4 -1NK0 8.9 DPO1_GEOSE
73 PsiBlast_CBE 93.9861% -90 - C4 -1NJX 7.5 DPO1_GEOSE
33 PsiBlast_CBE 93.8560% -93 - C4 -4DSE Error ?
57 PsiBlast_CBE 93.8461% -93 - C4 -2HVH 16.7 ?
55 PsiBlast_CBE 93.7661% -90 - C4 -2HVI 18.8 ?
88 PsiBlast_CBE 93.6261% -92 - C4 -2HHW 18.0 ?
83 PsiBlast_CBE 93.4861% -93 - C4 -4DSJ 10.0 ?
21 PsiBlast_CBE 93.1360% -93 - C4 -4DS5 Error ?
82 PsiBlast_CBE 92.6261% -94 - C4 -4DSJ 8.5 ?
22 PsiBlast_CBE 92.3160% -93 - C4 -4DS4 Error ?
25 PsiBlast_CBE 92.0660% -94 - C4 -4F8R Error ?
105 Fugue 73.1530% -67 - C4 -4X0Q 4.5 DPOLQ_HUMAN
104 Fugue 72.9031% -65 - C4 -4XVK 8.0 DPOLN_HUMAN
94 PsiBlast_CBE 72.8844% -80 - C4 -4XIU 12.8 DPO1_THEAQ
97 PsiBlast_CBE 72.6444% -80 - C4 -4N5S 13.3 DPO1_THEAQ
99 PsiBlast_CBE 71.9144% -79 - C4 -4KTQ 7.3 DPO1_THEAQ
100 PsiBlast_CBE 71.3444% -82 - C4 -1QSY 12.9 DPO1_THEAQ
95 PsiBlast_CBE 70.3944% -80 - C4 -2KTQ 10.5 DPO1_THEAQ
96 PsiBlast_CBE 69.6444% -80 - C4 -5KTQ 4.1 DPO1_THEAQ
98 PsiBlast_CBE 68.3644% -86 - C4 -4N56 7.2 DPO1_THEAQ