@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1679: (2016-03-27 )
VAKEYAQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYHAYDYARSGNPTREKVEQAIAELEGGTNGFAFASGMAAVSAALFTLSKGDHFIIAKDVYGGTFRLVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTVAKLAKANGCYTFVDNTFLTPLIQKPLELGADLVIHSATKFLGGHSDILAGLIVTNNPNLAEAVYFLQNSTGGVLGVQDSWLLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAVHYPGLPSHAGYDIQVEQATSGGAVLSFDLGSEEAVRELVTHLELPVFSVSLGAVESILSYPAKMSHAAVPEEERLAQGITPGLLRFSAGLEDAEDLIADLKQALSFIKKGSVAK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_A_2(4HF8)
?
[Raw transfer]



LCS_A_2(4OMA)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



NLE_A_2(3JWB)
?
[Raw transfer]



PLP_C_13(1IBJ)
METC_ARATH
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



MPJ_A_2(3JWA)
?
[Raw transfer]



ECX_A_2(3JW9)
?
[Raw transfer]
1 PsiBlast_PDB 87.6849% -98 - C1 -4L0O - METB_HELPY -
10 PsiBlast_PDB 86.9942% -98 - C1 -3JWA 3.2 ?
26 PsiBlast_CBE 86.7949%-100 - C1 -4L0O - METB_HELPY -
11 PsiBlast_PDB 86.7942% -98 - C1 -3JWB 2.3 ?
7 PsiBlast_PDB 86.6342% -98 - C1 -4HF8 5.8 ?
3 PsiBlast_PDB 86.5442% -99 - C1 -4OMA 6.2 ?
9 PsiBlast_PDB 86.3141% -98 - C1 -3JW9 3.6 ?
37 PsiBlast_CBE 85.5742% -96 - C1 -1E5E 4.9 ?
24 PsiBlast_CBE 85.5649% -98 - C1 -4L0O - METB_HELPY -
22 PsiBlast_CBE 85.4549%-102 - C1 -4L0O - METB_HELPY -
12 PsiBlast_PDB 85.0842%-100 - C1 -2RFV - ? -
118 HHSearch 84.7742%-101 - C1 -2RFV - ? -
23 PsiBlast_CBE 84.6749% -97 - C1 -4L0O - METB_HELPY -
18 PsiBlast_PDB 84.4342% -94 - C1 -1E5F 3.5 ?
36 PsiBlast_CBE 84.3642% -96 - C1 -1E5F 3.8 ?
25 PsiBlast_CBE 84.2849%-100 - C1 -4L0O - METB_HELPY -
21 PsiBlast_CBE 84.0949%-100 - C1 -4L0O - METB_HELPY -
17 PsiBlast_PDB 83.9442% -94 - C1 -1E5E 5.2 ?
65 PsiBlast_CBE 83.0642%-101 - C1 -1PG8 - MEGL_PSEPU -
29 PsiBlast_CBE 82.9945% -94 - C1 -4IY7 - ? -
8 PsiBlast_PDB 82.8342% -99 - C1 -3MKJ 4.7 ?
115 HHSearch 81.4342% -91 - C1 -1E5E 5.2 ?
89 PsiBlast_CBE 81.1540%-110 - C1 -1PFF 2.0 ?
125 HHSearch 80.6740%-107 * C1 *1PFF 2.0 ?
28 PsiBlast_CBE 79.4145%-102 - C1 -1IBJ 3.5 METC_ARATH
113 HHSearch 78.6844% -98 - C1 -1IBJ 3.9 METC_ARATH
2 PsiBlast_PDB 78.3845%-102 - C1 -1IBJ 3.9 METC_ARATH
120 HHSearch 64.9133% -86 - C1 -2CTZ 4.6 ?