@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1680: (2016-03-27 )
MAKLKQETIAAQIGNRKCERTGAVNMPVYFSTAYQHADLGVSTGYDYTRTGNPTRDALQEALAELENGTHAFATSSGMSAIQLVFQLFKTGEHIISSQDLYGGTFRYFEQFGAQYQIGFSYWDGAEIADLEKLIRPETKAIFIETPTNPLMQETDIATVAKWAHAHDLLVIVDNTFYTPVLQQPLSLGADIVIHSATKYLGGHNDVLAGAVIVKEEKLGKFFFDQLNATGTVLSPFDSWLLIRGLKTLVLRVRQHQANAQKIAAFLEEHKLVEEVRYPGRGGMISFFIRDAALVSPLLKELELFTFAESLGGVESLITYPTTQTHADIPVELRNSYGLTDKLLRISVGIEASEDLIADLSKALDAVLEEVSARG

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLG_A_2(4HF8)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



LCS_A_2(4OMA)
?
[Raw transfer]



PPJ_A_3(1E5E)
?
[Raw transfer]



PLP_B_8(1E5F)
?
[Raw transfer]



PLP_A_3(1E5F)
?
[Raw transfer]



PPJ_B_7(1E5E)
?
[Raw transfer]



PZP_A_2(3MKJ)
?
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



PLP_A_11(1IBJ)
METC_ARATH
[Raw transfer]



NLE_A_2(3JWB)
?
[Raw transfer]



PLP_A_3(2CTZ)
?
[Raw transfer]



PLP_C_13(1IBJ)
METC_ARATH
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



EDO_A_22(1PFF)
?
[Raw transfer]



MPJ_A_2(3JWA)
?
[Raw transfer]



ECX_A_2(3JW9)
?
[Raw transfer]
29 PsiBlast_CBE 91.5645% -97 - C1 -4IY7 - ? -
2 PsiBlast_PDB 91.0945% -95 - C1 -4IY7 - ? -
30 PsiBlast_CBE 90.9945% -96 - C1 -4IY7 - ? -
28 PsiBlast_CBE 90.7945% -95 - C1 -4IY7 - ? -
3 PsiBlast_PDB 90.6545% -96 - C1 -4IYO - ? -
119 HHSearch 90.4844% -98 - C1 -3QHX - ? -
19 PsiBlast_PDB 90.3541%-100 - C1 -3QHX - ? -
1 PsiBlast_PDB 90.1147%-107 - C1 -4L0O - METB_HELPY -
26 PsiBlast_CBE 89.9547%-107 - C1 -4L0O - METB_HELPY -
115 HHSearch 88.7940%-107 - C1 -2RFV - ? -
112 HHSearch 88.7243%-101 - C1 -3COG - CGL_HUMAN -
20 PsiBlast_PDB 88.6241%-100 - C1 -3QI6 - ? -
21 PsiBlast_CBE 88.5447%-106 - C1 -4L0O - METB_HELPY -
27 PsiBlast_CBE 88.0447%-107 - C1 -4L0O - METB_HELPY -
24 PsiBlast_CBE 88.0147%-106 - C1 -4L0O - METB_HELPY -
22 PsiBlast_CBE 87.5947%-107 - C1 -4L0O - METB_HELPY -
113 HHSearch 87.5440%-104 - C1 -1E5E 5.3 ?
25 PsiBlast_CBE 87.2547%-106 - C1 -4L0O - METB_HELPY -
5 PsiBlast_PDB 86.9541%-107 - C1 -1IBJ 4.0 METC_ARATH
116 HHSearch 86.8341%-102 - C1 -1IBJ 3.9 METC_ARATH
6 PsiBlast_PDB 86.7040%-102 - C1 -4OMA 6.3 ?
42 PsiBlast_CBE 86.3739%-103 - C1 -1E5E 5.2 ?
18 PsiBlast_PDB 85.6839%-102 - C1 -1E5F 3.6 ?
9 PsiBlast_PDB 85.6740%-100 - C1 -4HF8 6.0 ?
10 PsiBlast_PDB 85.5240%-101 - C1 -3JWA 2.2 ?
11 PsiBlast_PDB 85.4340%-100 - C1 -3JWB 1.9 ?
41 PsiBlast_CBE 84.7439%-105 - C1 -1E5F 3.7 ?
31 PsiBlast_CBE 84.5441%-105 - C1 -1IBJ 3.5 METC_ARATH
12 PsiBlast_PDB 83.9540%-102 - C1 -3JW9 3.4 ?
17 PsiBlast_PDB 82.9439%-102 - C1 -1E5E 5.3 ?
8 PsiBlast_PDB 82.1640%-102 - C1 -3MKJ 4.8 ?
44 PsiBlast_CBE 81.3542%-109 - C1 -1PFF 2.0 ?
125 HHSearch 80.2744%-107 * C1 *1PFF 2.0 ?
122 HHSearch 71.8231% -95 - C1 -2CTZ 4.6 ?