@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1806: (2016-03-28 )
MAEVLEKVTKIIVDRLGVEESKVTLEASFKEDLGADSLDVVELVMELEDEFGVEISDGDAENINTVGDAVKYIEANA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSE_B_12(2FAE)
ACP_ECOLI
[Raw transfer]



PM4_A_14(2FAC)
ACP_ECOLI
[Raw transfer]



PM5_A_12(2FAD)
ACP_ECOLI
[Raw transfer]



PM4_B_15(2FAC)
ACP_ECOLI
[Raw transfer]



PM8_A_11(2FAE)
ACP_ECOLI
[Raw transfer]



PM5_B_13(2FAD)
ACP_ECOLI
[Raw transfer]



PSR_A_11(1L0I)
ACP_ECOLI
[Raw transfer]



IMD_A_16(1T8K)
ACP_ECOLI
[Raw transfer]



1R3_B_6(4KEH)
?
[Raw transfer]



1R3_A_5(4KEH)
?
[Raw transfer]



ZMK_B_6(4ETW)
ACP_SHIF8
[Raw transfer]



ZMK_D_5(4ETW)
ACP_SHIF8
[Raw transfer]
1 PsiBlast_PDB 94.5081%-150 - C5 -2X2B - ACP_BACSU -
21 PsiBlast_CBE 90.0971%-130 - C5 -4DXE - ACP_STAAC -
24 PsiBlast_CBE 89.2656%-137 - C5 -4IHH - ? -
3 PsiBlast_PDB 88.7571%-138 - C5 -4DXE - ACP_STAAC -
4 PsiBlast_PDB 88.4367%-128 - C5 -1X3O - ACP_THET8 -
32 PsiBlast_CBE 88.2756%-137 - C5 -4IHG - ? -
22 PsiBlast_CBE 87.9352%-135 - C5 -3GZM - ? -
20 PsiBlast_PDB 87.3859%-127 - C5 -1T8K 3.9 ACP_ECOLI
7 PsiBlast_PDB 87.2952%-146 - C5 -3GZL - ? -
47 PsiBlast_CBE 86.3459%-128 - C5 -4KEH 3.3 ?
53 PsiBlast_CBE 86.2659%-117 - C5 -2FAD 3.0 ACP_ECOLI
48 PsiBlast_CBE 85.7359%-120 - C5 -4KEH 3.4 ?
50 PsiBlast_CBE 85.6759%-114 - C5 -4ETW 2.0 ACP_SHIF8
55 PsiBlast_CBE 85.6159%-119 - C5 -2FAC 5.0 ACP_ECOLI
56 PsiBlast_CBE 85.3459%-115 - C5 -2FAC 5.0 ACP_ECOLI
8 PsiBlast_PDB 85.2852%-124 - C5 -3GZM - ? -
52 PsiBlast_CBE 85.1559%-115 - C5 -2FAE 4.3 ACP_ECOLI
38 PsiBlast_CBE 85.1456%-128 - C5 -3EJE - ACP_ECOLI -
49 PsiBlast_CBE 85.0759%-112 - C5 -4ETW 2.0 ACP_SHIF8
33 PsiBlast_CBE 85.0556%-148 - C5 -4IHF - ? -
51 PsiBlast_CBE 84.6959%-110 - C5 -2FAE Error ACP_ECOLI
54 PsiBlast_CBE 84.5659%-113 - C5 -2FAD 4.5 ACP_ECOLI
60 HHSearch 82.6856%-128 - C5 -1L0I 3.4 ACP_ECOLI