@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1960: (2016-03-30 )
MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKSTILKTMSRLMKPSKGAVYLDGKTIHSQPTRDVAKQLAILPQNPSAPDGLTVFELISYGRSPHQSSFKSITAKDREIIFWSLRVTNLTEFADRPIDSLSGGQRQRAWIAMALAQETDVLFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKVIAEGTPTSVMTEQTLEDVFNIKADILIDPRSGVPLCLPYETCNGCEIVKELDSIAK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4K8O)

[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]



ATP_D_6(2IXE)

[Raw transfer]



ATP_A_2(2IXG)

[Raw transfer]



ATP_D_15(2IXF)

[Raw transfer]



ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]



ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]
21 PsiBlast_CBE 97.8531%-110 - C1 -4G1U - HMUV_YERPE -
1 PsiBlast_PDB 96.4731%-110 - C1 -4G1U - HMUV_YERPE -
22 PsiBlast_CBE 87.1131% -89 - C1 -2IT1 - ? -
44 HHSearch 83.6729% -93 - C1 -3GFO - ECFA3_CLOP1 -
7 PsiBlast_PDB 83.4928% -97 - C1 -3GFO - ECFA3_CLOP1 -
49 HHSearch 83.2632% -93 - C1 -1B0U 5.7 HISP_SALTY
3 PsiBlast_PDB 80.9131% -83 - C1 -2IT1 - ? -
37 HHSearch 79.6325% -94 - C1 -3RLF - MALK_ECOLI -
35 HHSearch 79.5429% -88 - C1 -2IT1 - ? -
4 PsiBlast_PDB 78.9330%-104 - C1 -4MKI - ECFA2_CALS4 -
47 HHSearch 77.9427% -96 - C1 -2OLJ - ? -
39 HHSearch 77.2325%-100 * C1 *3TUI - METN_ECOLI -
50 HHSearch 76.1826%-102 - C1 -1G6H - LIVG_METJA -
48 HHSearch 75.3626%-100 - C1 -1JI0 - ? -
58 Fugue 74.7928% -75 - C1 -4F4C - PGP1_CAEEL -
53 Fugue 74.0625% -84 - C1 -1Z47 - ? -
2 PsiBlast_PDB 73.9830%-111 - C1 -2NQ2 - Y1470_HAEIN -
41 HHSearch 73.0231% -82 - C1 -3B60 - MSBA_SALTY -
32 HHSearch 72.2229% -92 - C1 -1Z47 - ? -
25 PsiBlast_CBE 71.7533% -82 - C1 -2IXF 6.0 TAP1_RAT
8 PsiBlast_PDB 69.5833% -81 - C1 -2IXF 6.1 TAP1_RAT
24 PsiBlast_CBE 69.3633% -74 - C1 -2IXF 6.2 TAP1_RAT
23 PsiBlast_CBE 67.0133% -77 - C1 -2IXF 6.3
17 PsiBlast_PDB 65.5732% -85 - C1 -4K8O 5.3
18 PsiBlast_PDB 64.9232% -87 - C1 -2IXG 5.5
28 PsiBlast_CBE 63.7432%-103 - C1 -4YMU 4.5 ?
15 PsiBlast_PDB 62.8633% -82 - C1 -2IXE 6.3 TAP1_RAT
13 PsiBlast_PDB 62.1832%-104 - C1 -4YMV 4.9 ?
29 PsiBlast_CBE 62.1233% -90 - C1 -2IXE 5.9
12 PsiBlast_PDB 60.4232%-103 - C1 -4YMU 5.2 ?
27 PsiBlast_CBE 59.9232%-102 - C1 -4YMV 5.4 ?