@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00112_CYSP_T: (2014-08-27 )
MSGWARALLLAAVLVVMACLVPAATASLHAEETLTSQFAEFKQKHGRVYESAAEEAFRLSVFRENLFLARLHAAANPHATFGVTPFSDLTREEFRSRYHNGAAHFAAAQERARVPVKVEVVGAPAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVVGGPGPTPEPTTTTTTSAPGPSPSYFVQMSCTDAACIVGCENVTLPTGQCLLTTSGVSAIVTCGAETLTEEVFLTSTHCSGPSVRSSVPLNKCNRLLRGSVEFFCGSSSSGRLADVDRQRRHQPYHSRHRRL

Atome Classification :

(15 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

VS1_C_6(1F29)
CYSP_TRYCR
[Raw transfer]



4MC_C_13(3LXS)
CYSP_TRYCR
[Raw transfer]



VS1_B_5(1F29)
CYSP_TRYCR
[Raw transfer]



D1R_C_12(2OZ2)
CYSP_TRYCR
[Raw transfer]



25B_B_8(3HD3)
CYSP_TRYCR
[Raw transfer]



D1R_A_2(2P7U)
?
[Raw transfer]



1RV_B_7(4KLB)
CYSP_TRYCR
[Raw transfer]



KB2_A_2(3IUT)
CYSP_TRYCR
[Raw transfer]



1RV_C_8(4KLB)
CYSP_TRYCR
[Raw transfer]



EDO_B_9(3HD3)
CYSP_TRYCR
[Raw transfer]



EDO_A_6(3LXS)
CYSP_TRYCR
[Raw transfer]



PEG_A_6(3HD3)
CYSP_TRYCR
[Raw transfer]



PG4_C_3(2B1M)
?
[Raw transfer]



PEG_B_10(3HD3)
CYSP_TRYCR
[Raw transfer]



EOH_A_5(3HD3)
CYSP_TRYCR
[Raw transfer]



CHAIN_E_5(2FO5)
CYSP2_HORVU
[Raw transfer]
-
PG4_A_15(3QT4)
?
[Raw transfer]



4MC_A_3(3LXS)
CYSP_TRYCR
[Raw transfer]



D1R_A_11(2OZ2)
CYSP_TRYCR
[Raw transfer]



PG6_A_20(3QT4)
?
[Raw transfer]



ACE_E_18(2FO5)
CYSP2_HORVU
[Raw transfer]



CHAIN_C_3(1S4V)
CYSEP_RICCO
[Raw transfer]
-
26 PsiBlast_CBE 92.88100%-101 - C1 -1F29 6.2 CYSP_TRYCR
27 PsiBlast_CBE 92.83100%-100 - C1 -1F29 6.2 CYSP_TRYCR
15 PsiBlast_PDB 92.29100%-100 - C1 -3LXS 3.4 CYSP_TRYCR
18 PsiBlast_PDB 92.0299% -99 - C1 -3IUT 5.4 CYSP_TRYCR
23 PsiBlast_CBE 92.00100%-101 - C1 -4KLB 4.1 CYSP_TRYCR
22 PsiBlast_CBE 91.92100%-100 - C1 -4KLB 3.2 CYSP_TRYCR
28 PsiBlast_CBE 91.7799%-102 - C1 -3HD3 5.8 CYSP_TRYCR
25 PsiBlast_CBE 91.70100% -98 - C1 -2OZ2 6.8 CYSP_TRYCR
24 PsiBlast_CBE 91.64100%-100 - C1 -3LXS 5.9 CYSP_TRYCR
17 PsiBlast_PDB 91.1999%-102 - C1 -3HD3 3.2 CYSP_TRYCR
19 PsiBlast_PDB 86.0970% -94 - C1 -2P7U 5.9 ?
44 HHSearch 77.9935% -70 - C1 -3QT4 2.1 ?
56 HHSearch 73.1645% -81 - C1 -1S4V 3.5 CYSEP_RICCO
55 HHSearch 72.6445% -80 - C1 -2FO5 3.5 CYSP2_HORVU
60 HHSearch 68.8035% -92 - C1 -2B1M 2.3 ?