@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00337_LEG4_H: (2014-09-05 )
MAYVPAPGYQPTYNPTLPYYQPIPGGLNVGMSVYIQGVASEHMKRFFVNFVVGQDPGSDVAFHFNPRFDGWDKVVFNTLQGGKWGSEERKRSMPFKKGAAFELVFIVLAEHYKVVVNGNPFYEYGHRLPLQMVTHLQVDGDLQLQSINFIGGQPLRPQGPPMMPPYPGPGHCHQQLNSLPTMEGPPTFNPPVPYFGRLQGGLTARRTIIIKGYVPPTGKSFAINFKVGSSGDIALHINPRMGNGTVVRNSLLNGSWGSEEKKITHNPFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLSAFQRVDTLEIQGDVTLSYVQI

Atome Classification :

(16 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LBT_A_2(3I8T)
LEG4_MOUSE
[Raw transfer]




LAT_D_4(2D6M)
LEG9_MOUSE
[Raw transfer]




LAT_D_4(2D6M)
LEG9_MOUSE
[Raw transfer]




LBT_A_2(3I8T)
LEG4_MOUSE
[Raw transfer]




NAD_A_5(4HAN)
LEG8_HUMAN
[Raw transfer]




LBT_A_4(2EAK)
LEG9_HUMAN
[Raw transfer]




NLC_A_2(2YY1)
LEG9_HUMAN
[Raw transfer]




SUGAR_A_2(2ZHN)
LEG9_HUMAN
[Raw transfer]

-

1GN_C_3(3GAL)
LEG7_HUMAN
[Raw transfer]




GOL_A_4(3I8T)
LEG4_MOUSE
[Raw transfer]




SUGAR_A_3(2D6N)
LEG9_MOUSE
[Raw transfer]

-

SUGAR_C_3(2D6P)
LEG9_MOUSE
[Raw transfer]

-

SUGAR_A_3(2D6O)
LEG9_MOUSE
[Raw transfer]

-

GOL_E_5(2D6O)
LEG9_MOUSE
[Raw transfer]




SUGAR_A_2(4FQZ)
LEG8_HUMAN
[Raw transfer]

-

SUGAR_A_3(3VKL)
LEG8_HUMAN
[Raw transfer]

-

SUGAR_A_3(3VKM)
LEG8_HUMAN
[Raw transfer]

-

SUGAR_A_2(3AP9)
LEG8_HUMAN
[Raw transfer]

-

EDO_A_5(3VKL)
LEG8_HUMAN
[Raw transfer]




SUGAR_X_3(2EAL)
LEG9_HUMAN
[Raw transfer]

-

PEG_A_5(3I8T)
LEG4_MOUSE
[Raw transfer]




6 PsiBlast_PDB 88.6636%-126 - C6 -3VKM 4.2 LEG8_HUMAN
5 PsiBlast_PDB 87.9736%-132 - C6 -3VKL 4.3 LEG8_HUMAN
7 PsiBlast_PDB 87.8136%-128 - C6 -4HAN 4.0 LEG8_HUMAN
4 PsiBlast_PDB 86.8136%-128 - C6 -4FQZ 3.8 LEG8_HUMAN
35 HHSearch 64.9582%-144 - C6 -3I8T 3.8 LEG4_MOUSE
37 HHSearch 55.7046%-134 - C6 -2D6M 4.3 LEG9_MOUSE
13 PsiBlast_PDB 54.7846%-136 - C6 -2D6P 3.6 LEG9_MOUSE
12 PsiBlast_PDB 54.3446%-138 - C6 -2D6N 4.2 LEG9_MOUSE
14 PsiBlast_PDB 53.3146%-137 - C6 -2D6O 3.7 LEG9_MOUSE
21 Fugue 53.1739%-135 - C6 -3GAL 3.0 LEG7_HUMAN
19 PsiBlast_PDB 51.4746%-141 - C6 -2EAK 4.1 LEG9_HUMAN
34 HHSearch 51.3345%-130 - C6 -2ZHN 4.8 LEG9_HUMAN
48 HHSearch 51.0731%-125 - C6 -4GXL -
36 HHSearch 50.7037%-129 - C6 -3AP9 4.9 LEG8_HUMAN
20 PsiBlast_PDB 50.5846%-139 - C6 -2EAL 4.0 LEG9_HUMAN
17 PsiBlast_PDB 49.6846%-135 - C6 -2YY1 3.3 LEG9_HUMAN