@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF03331_LPXC_AQUAE: (2014-10-06 )
MGLEKTVKEKLSFEGVGIHTGEYSKLIIHPEKEGTGIRFFKNGVYIPARHEFVVHTNHSTDLGFKGQRIKTVEHILSVLHLLEITNVTIEVIGNEIPILDGSGWEFYEAIRKNILNQNREIDYFVVEEPIIVEDEGRLIKAEPSDTLEVTYEGEFKNFLGRQKFTFVEGNEEEIVLARTFCFDWEIEHIKKVGLGKGGSLKNTLVLGKDKVYNPEGLRYENEPVRHKVFDLIGDLYLLGSPVKGKFYSFRGGHSLNVKLVKELAKKQKLTRDLPHLPSVQAL

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P76_A_3(3P76)
LPXC_AQUAE
[Raw transfer]




1WM_A_4(4LCG)
LPXC_PSEAE
[Raw transfer]




TUX_B_10(2GO4)
LPXC_AQUAE
[Raw transfer]




1JS_A_5(4J3D)
LPXC_PSEAE
[Raw transfer]




TUX_A_9(2GO4)
LPXC_AQUAE
[Raw transfer]




1WN_A_5(4LCH)
LPXC_PSEAE
[Raw transfer]




L58_A_6(4FW5)
LPXC_PSEAE
[Raw transfer]




MYR_A_10(1P42)
LPXC_AQUAE
[Raw transfer]




PAM_A_16(1YHC)
LPXC_AQUAE
[Raw transfer]




L52_A_6(4FW3)
LPXC_PSEAE
[Raw transfer]




PAM_B_15(1YHC)
LPXC_AQUAE
[Raw transfer]




3P3_A_6(4FW4)
LPXC_PSEAE
[Raw transfer]




PAM_A_11(1YH8)
LPXC_AQUAE
[Raw transfer]




PLM_A_8(2IES)
LPXC_AQUAE
[Raw transfer]




PAM_B_12(1YH8)
LPXC_AQUAE
[Raw transfer]




PLM_B_12(2IES)
LPXC_AQUAE
[Raw transfer]




1WL_A_4(4LCF)
LPXC_PSEAE
[Raw transfer]




MYR_B_11(1P42)
LPXC_AQUAE
[Raw transfer]




RFN_A_3(3UHM)
LPXC_PSEAE
[Raw transfer]




PLM_A_10(2GO3)
LPXC_AQUAE
[Raw transfer]




MYR_B_16(2J65)
LPXC_AQUAE
[Raw transfer]




03I_A_4(3U1Y)
LPXC_PSEAE
[Raw transfer]




PLM_A_14(2IER)
LPXC_AQUAE
[Raw transfer]




AI7_A_11(2O3Z)
LPXC_AQUAE
[Raw transfer]




MYR_B_14(2J65)
LPXC_AQUAE
[Raw transfer]




GVR_A_5(2VES)
LPXC_PSEAE
[Raw transfer]




PLM_B_15(2IER)
LPXC_AQUAE
[Raw transfer]




UDP_B_13(2IER)
LPXC_AQUAE
[Raw transfer]




POP_A_5(2IES)
LPXC_AQUAE
[Raw transfer]




UDP_A_12(2IER)
LPXC_AQUAE
[Raw transfer]




UDP_B_15(2J65)
LPXC_AQUAE
[Raw transfer]




POP_B_11(2IES)
LPXC_AQUAE
[Raw transfer]




UDP_A_9(2J65)
LPXC_AQUAE
[Raw transfer]




MYR_A_12(2GO3)
LPXC_AQUAE
[Raw transfer]




MYR_A_12(2GO3)
LPXC_AQUAE
[Raw transfer]




PAM_B_15(1YHC)
LPXC_AQUAE
[Raw transfer]




PLM_A_10(2GO3)
LPXC_AQUAE
[Raw transfer]




IMD_B_14(2GO3)
LPXC_AQUAE
[Raw transfer]




IMD_A_13(2GO3)
LPXC_AQUAE
[Raw transfer]




AI7_A_11(2O3Z)
LPXC_AQUAE
[Raw transfer]




TUX_B_10(2GO4)
LPXC_AQUAE
[Raw transfer]




AI7_B_12(2O3Z)
LPXC_AQUAE
[Raw transfer]




5 PsiBlast_PDB 98.9199% -90 - C1 -3P76 9.2 LPXC_AQUAE
22 PsiBlast_CBE 96.3299% -89 - C1 -2J65 4.6 LPXC_AQUAE
1 PsiBlast_PDB 96.1699% -88 - C1 -2J65 3.6 LPXC_AQUAE
4 PsiBlast_PDB 95.5699% -88 * C1 *2O3Z 4.9 LPXC_AQUAE
2 PsiBlast_PDB 95.3599% -87 - C1 -2IER 4.7 LPXC_AQUAE
8 PsiBlast_PDB 94.8299% -86 - C1 -1YHC 5.0 LPXC_AQUAE
24 PsiBlast_CBE 94.6499% -87 - C1 -2IER 4.6 LPXC_AQUAE
9 PsiBlast_PDB 94.4799% -87 - C1 -2GO3 5.0 LPXC_AQUAE
29 PsiBlast_CBE 93.0899% -87 - C1 -2GO3 3.9 LPXC_AQUAE
25 PsiBlast_CBE 92.1399% -85 - C1 -1YHC 5.3 LPXC_AQUAE
21 PsiBlast_CBE 92.0099% -87 - C1 -2O3Z 2.8 LPXC_AQUAE
27 PsiBlast_CBE 91.3599% -84 - C1 -1P42 4.2 LPXC_AQUAE
28 PsiBlast_CBE 91.1199% -87 - C1 -2GO4 5.8 LPXC_AQUAE
6 PsiBlast_PDB 91.0899% -84 - C1 -1P42 4.4 LPXC_AQUAE
7 PsiBlast_PDB 90.7199% -85 - C1 -1YH8 4.8 LPXC_AQUAE
26 PsiBlast_CBE 90.6199% -85 - C1 -1YH8 5.0 LPXC_AQUAE
10 PsiBlast_PDB 90.5599% -86 - C1 -2GO4 7.0 LPXC_AQUAE
23 PsiBlast_CBE 90.2999% -84 - C1 -2IES 5.1 LPXC_AQUAE
3 PsiBlast_PDB 90.0599% -84 - C1 -2IES 5.3 LPXC_AQUAE
20 PsiBlast_PDB 21.2436% -76 - C1 -4FW5 6.6 LPXC_PSEAE
18 PsiBlast_PDB 19.3636% -76 - C1 -4FW3 5.0 LPXC_PSEAE
14 PsiBlast_PDB 18.8136% -73 - C1 -3UHM 4.3 LPXC_PSEAE
13 PsiBlast_PDB 18.4636% -74 - C1 -3U1Y 4.4 LPXC_PSEAE
17 PsiBlast_PDB 17.8936% -71 - C1 -4LCH 7.4 LPXC_PSEAE
19 PsiBlast_PDB 17.8636% -75 - C1 -4FW4 7.2 LPXC_PSEAE
12 PsiBlast_PDB 17.4536% -69 - C1 -2VES 4.2 LPXC_PSEAE
15 PsiBlast_PDB 17.3236% -70 - C1 -4LCF 5.9 LPXC_PSEAE
16 PsiBlast_PDB 13.7236% -70 - C1 -4LCG 6.1 LPXC_PSEAE
11 PsiBlast_PDB 11.1636% -79 - C1 -4J3D 6.8 LPXC_PSEAE