@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-09 )
AVSCGQVSSALSPCISYARGNGASPSAACCSGVRSLVSSARSTADKQAACKCIKSAAAGLNAGKAAGIPTKCGVSVPYAISSSVDCSKIR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
28 SP3 91.9870%-113 - C4 -1FK5 6.0 NLTP_MAIZE
10 HHSearch 89.3769%-121 - C4 -1AFH - NLTP_MAIZE -
15 HHSearch 88.5248%-121 - C4 -1BWO 3.7 NLTP1_WHEAT
11 HHSearch 86.3559%-118 - C4 -1T12 - NLTP1_TOBAC -
13 HHSearch 85.3351%-118 - C4 -2ALG 2.4 NLTP1_PRUPE
14 HHSearch 84.3443%-132 - C4 -1SIY - NLTP1_VIGRR -
23 HHSearch 61.2425%-106 - C4 -1SM7 - ? -
22 HHSearch 59.7021%-126 * C4 *1BEA - ITRF_MAIZE -
26 HHSearch 57.9632%-101 - C4 -1PSY - 2SS_RICCO -
3 Fugue 54.2528% -93 - C4 -1L6H - NLTPX_ORYSJ -
2 Fugue 49.8325% -73 - C4 -2RKN - DIRL1_ARATH -
24 HHSearch 48.8820%-112 - C4 -1S6D - 2SS8_HELAN -
16 HHSearch 47.0625% -84 - C4 -2RKN - DIRL1_ARATH -
9 Fugue 44.7710% -82 - C4 -2OCC - COX5A_BOVIN -
17 HHSearch 44.2033% -71 - C4 -1L6H - NLTPX_ORYSJ -
8 Fugue 43.4017% -38 - C4 -1S6D - 2SS8_HELAN -
4 Fugue 41.3214% -39 - C4 -1W2Q - CONG_ARAHY -
21 HHSearch 40.2718% -74 - C4 -1B1U - IAAT_ELECO -
5 Fugue 38.2722% -50 - C4 -1PSY - 2SS_RICCO -
18 HHSearch 36.7433% -49 - C4 -1N89 - NLT2G_WHEAT -


User Run . : Multi Template Modeling Result:

(5 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



HP6_G_7(2ALG)
NLTP1_PRUPE
[Raw transfer]



LPC_A_4(1BWO)
NLTP1_WHEAT
[Raw transfer]
37 96.24100%-128 - C- -M037 - -
36 93.17100%-119 - C- -M036 - -
39 92.87100%-116 - C- -M039 - -
33 91.08100%-121 - C- -M033 - -
32 90.98100%-119 - C- -M032 - -