@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : new_query: (2014-05-13 )
AVTCGQVGSSIAPCVAYVTGKAAAVSPGCCSGIRGLNNMARTTADRQAACRCLKSMAGSIKALNMGKVAGVPGKCGVNVGFPISMSTDCNKVT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
12 HHSearch 92.0756%-134 - C2 -1T12 - NLTP1_TOBAC -
13 HHSearch 88.7655%-138 - C2 -2ALG 3.9 NLTP1_PRUPE
30 SP3 88.7155%-127 - C2 -1FK5 5.4 NLTP_MAIZE
16 HHSearch 86.8544%-127 - C2 -1SIY - NLTP1_VIGRR -
11 HHSearch 86.3356%-131 - C2 -1AFH - NLTP_MAIZE -
15 HHSearch 85.8844%-136 - C2 -1BWO - NLTP1_WHEAT -
25 HHSearch 57.4819%-136 - C2 -1SM7 - ? -
23 HHSearch 53.1820%-170 - C2 -1BEA - ITRF_MAIZE -
39 SP3 51.6916%-130 - C2 -1HSS - IAA1_WHEAT -
9 Fugue 51.3833% -77 - C2 -4B8V - ? -
27 HHSearch 49.5415%-107 - C2 -1PSY - 2SS_RICCO -
7 Fugue 49.0515% -54 - C2 -1PSY - 2SS_RICCO -
36 SP3 48.6715%-108 - C2 -1QPO - NADC_MYCTU -
17 HHSearch 48.3321%-109 - C2 -2RKN - DIRL1_ARATH -
2 Fugue 47.5920% -80 - C2 -2RKN - DIRL1_ARATH -
24 HHSearch 43.0416%-128 - C2 -1S6D - 2SS8_HELAN -
26 HHSearch 42.1016% -97 - C2 -3OB4 - ? -
38 SP3 41.9412% -87 - C2 -1A0P - ? -
22 HHSearch 40.4412%-132 * C2 *1B1U - IAAT_ELECO -
10 Fugue 38.6622% -86 - C2 -1L6H - NLTPX_ORYSJ -


User Run . : Multi Template Modeling Result:

(3 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OLA_A_2(1FK5)
NLTP_MAIZE
[Raw transfer]



DAO_E_5(2ALG)
NLTP1_PRUPE
[Raw transfer]
40 88.80100%-138 - C- -M040 - -
47 34.63100% 9 - C- -M047 - -
46 34.40100% 6 - C- -M046 - -