@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0037: (2015-11-27 )
MALLIVESPAKARTISKYLSKEFKVAASFGHVRDLPVKNGSVDPDNDFAIKYEIIEKAEKYVKELVKEASQTSDIYLATDPDREGEAIAWNVIEALKERKAINDKSNIYRVVFNEITKRAVQEAVKNPREINMDLVRAQQARRALDYLVGFSLSPLLWTKLSGSKSAGRVQSVALKLICEREDEISKFVSQEYWSIRAEIKDSKGETFFAMLSHYDNKKLEKFDIKNEEEAKGLVKQIESRQYAVSTVERKQVKRNPLPPFITSSLQQDAVNKLYFNVKNVMRIAQDLYEGIDIGGETVGLITYMRTDGFYIADEAVNSIRRSIKSLYGNKYLPKSSRQYVKKVKNAQEAHEAIRPTDIDRTPDSIKDYLTPEQFKLYGLIWKRTIASQMESAILDQVVVEISSTDQKVILRASGSIIFFDGFYKVYKNNVDGEDESMIPTMKEGEECKLISVDPEQHFTQPPSRYSEASIVKKMEEIGIGRPSTYAAIISVLQDREYVTLDNKRFIPSSRGKIVTIFLETFFQRCVEYDFTAQMEEKLDLISNGRADWKKELGYFWVPFFNHVNSVKQMTHDEIFNGIRDLVVDWFCSEEGKKEVNKKCPDCPDGILKLNFGKAGVFLGCSNYPTCTHTKEITGSNDNSEYPKSLGIDGVTEQEVVIKKGPFGLYLEFNSESEKKKTVSIPKDINVNDIDLSTATRLLSLPKVIGEHPETGKEVKIGLGRFGYYIFYDSKYFSLKKSFKEVLEIQLDEAVQIIANSPRKELKSLGFNEKGKEVFICNGRYGFYIKCGKTNVALGKNADIESVDLRRALELIKSKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]




TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]




T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]




TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]




TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]




NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]

-

NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]

-

11 PsiBlast_PDB 89.3242% -90 - C3 -3PX7 13.5 TOP1_ECOLI
1 PsiBlast_PDB 89.3042% -81 - C3 -1CY1 2.8 TOP1_ECOLI
6 PsiBlast_PDB 89.2642% -85 - C3 -1CY4 3.9 TOP1_ECOLI
23 HHSearch 88.9645% -80 - C3 -1MW9 - TOP1_ECOLI -
2 PsiBlast_PDB 88.5242% -81 - C3 -1CY2 3.3 TOP1_ECOLI
7 PsiBlast_PDB 88.4642% -81 - C3 -1ECL - TOP1_ECOLI -
10 PsiBlast_PDB 88.3942% -78 - C3 -1MW9 - TOP1_ECOLI -
4 PsiBlast_PDB 88.1842% -81 - C3 -1CY8 3.8 TOP1_ECOLI
13 PsiBlast_PDB 87.7438% -78 - C3 -2GAJ - TOP1_THEMA -
9 PsiBlast_PDB 87.7442% -79 - C3 -1MW8 9.2 TOP1_ECOLI
12 PsiBlast_PDB 87.6638% -78 - C3 -2GAI - TOP1_THEMA -
3 PsiBlast_PDB 87.6042% -84 - C3 -1CY6 3.3 TOP1_ECOLI
8 PsiBlast_PDB 87.5842% -80 - C3 -3PWT - TOP1_ECOLI -
5 PsiBlast_PDB 87.3742% -81 - C3 -1CY0 - TOP1_ECOLI -
21 HHSearch 87.1638% -74 - C3 -2GAI - TOP1_THEMA -
44 Fugue 85.5338% -60 - C3 -2GAI - TOP1_THEMA -
49 Fugue 82.0231% -52 - C3 -1GKU - RGYR_ARCFU -
15 PsiBlast_PDB 75.0330% -60 - C3 -1GKU - RGYR_ARCFU -
14 PsiBlast_PDB 74.5830% -62 - C3 -1GL9 - RGYR_ARCFU -
50 Fugue 74.4526% -56 - C3 -4CGY - TOP3A_HUMAN -