@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0244: (2015-11-29 )
MTVQRKKISLIGAGNIGGALAHMVTLRELGDVVLFDVNDGIPQGKALDIAESSPIGGFSVNIIGTNRYGDIKNSDAIIITAGIARKPGMSRDDLLQTNAKVMKEVGENIRKYSPNAFVIVVTNPLDAMVSVVHKFSNLPANMIVGMAGVLDSSRFRYFLARELNISVEDVSAFVLGGHGDTMVPLIRCASIAGIPLTQIIDMGLITQEKVDEIVKRTRNGGKEIIDLLKSGSAYYAPASSSIYMLESYLRDEKRILPCATYLNGEYGVKDLFIGVPVIIGKNGIEKVLEVKMDDSEQEMFNKSVNAVKELVKSLSL

Atome Classification :

(70 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_K_11(1SOW)
LDH_TOXGO
[Raw transfer]




NAD_B_8(4ND1)
?
[Raw transfer]




NAD_B_7(4ND3)
?
[Raw transfer]




NAD_A_3(4ND1)
?
[Raw transfer]




NAD_A_3(4ND4)
?
[Raw transfer]




NAD_A_3(4ND3)
?
[Raw transfer]




NAD_B_8(4ND4)
?
[Raw transfer]




NAI_D_11(4PLT)
?
[Raw transfer]




NAI_A_7(4PLT)
?
[Raw transfer]




NAI_B_5(4PLT)
?
[Raw transfer]




NAI_C_9(4PLT)
?
[Raw transfer]




NAD_A_3(3CZM)
LDH_TOXGO
[Raw transfer]




NAI_D_11(4PLV)
?
[Raw transfer]




NAD_B_5(3CZM)
LDH_TOXGO
[Raw transfer]




NAD_B_9(1UXG)
MDH_CHLAA
[Raw transfer]




NAD_A_5(1UXH)
MDH_CHLAA
[Raw transfer]




NAD_B_5(1UXI)
MDH_CHLAA
[Raw transfer]




NAD_B_5(2FN7)
?
[Raw transfer]




NAD_B_6(3GVH)
MDH_BRUA2
[Raw transfer]




NAD_A_3(2FN7)
?
[Raw transfer]




NAI_B_7(4PLV)
?
[Raw transfer]




NAD_I_9(1SOW)
LDH_TOXGO
[Raw transfer]




NAI_C_9(4PLW)
?
[Raw transfer]




NAI_C_9(4PLV)
?
[Raw transfer]




NAD_A_3(1GUY)
MDH_CHLAA
[Raw transfer]




NAD_B_6(1GUZ)
MDH_CHLTE
[Raw transfer]




NAI_A_5(4PLW)
?
[Raw transfer]




NAD_D_8(3GVH)
MDH_BRUA2
[Raw transfer]




NAI_D_11(4PLW)
?
[Raw transfer]




NAD_C_7(1GUZ)
MDH_CHLTE
[Raw transfer]




NAD_D_8(1GUZ)
MDH_CHLTE
[Raw transfer]




A3D_B_7(4ND2)
?
[Raw transfer]




NAD_A_3(1UXJ)
MDH_CHLAA
[Raw transfer]




NAI_B_7(4PLW)
?
[Raw transfer]




NAD_A_5(1OC4)
LDH_PLABA
[Raw transfer]




NAD_C_11(1UXJ)
MDH_CHLAA
[Raw transfer]




A3D_A_3(4ND2)
?
[Raw transfer]




NAI_A_7(4PLH)
?
[Raw transfer]




NAD_B_9(1UXH)
MDH_CHLAA
[Raw transfer]




A3D_I_9(1PZG)
?
[Raw transfer]




NAD_A_5(3GVH)
MDH_BRUA2
[Raw transfer]




NAD_C_9(3OM9)
?
[Raw transfer]




NAD_B_9(1OC4)
LDH_PLABA
[Raw transfer]




NAD_A_3(1UXK)
MDH_CHLAA
[Raw transfer]




NAD_C_7(3GVH)
MDH_BRUA2
[Raw transfer]




NAD_A_5(1GUZ)
MDH_CHLTE
[Raw transfer]




NAD_A_5(1GUZ)
MDH_CHLTE
[Raw transfer]




NAD_C_7(1GUY)
MDH_CHLAA
[Raw transfer]




NAD_A_3(1UR5)
MDH_CHLAA
[Raw transfer]




NAD_C_9(1UR5)
MDH_CHLAA
[Raw transfer]




NAD_A_5(1GV0)
MDH_CHLTE
[Raw transfer]




NAD_A_5(1UXG)
MDH_CHLAA
[Raw transfer]




NAI_B_9(4PLH)
?
[Raw transfer]




NAI_C_11(4PLH)
?
[Raw transfer]




FMR_B_11(1UXH)
MDH_CHLAA
[Raw transfer]




NAI_A_5(4PLV)
?
[Raw transfer]




FMR_B_11(1UXG)
MDH_CHLAA
[Raw transfer]




NAI_D_14(4PLH)
?
[Raw transfer]




FUM_A_4(1UXI)
MDH_CHLAA
[Raw transfer]




APR_A_5(4ROS)
MDH_METEP
[Raw transfer]




FUM_B_6(1UXI)
MDH_CHLAA
[Raw transfer]




NAD_C_16(1UXK)
MDH_CHLAA
[Raw transfer]




GOL_A_7(4ND4)
?
[Raw transfer]




NAD_B_7(1GV0)
MDH_CHLTE
[Raw transfer]




NAD_A_3(1UXI)
MDH_CHLAA
[Raw transfer]




GOL_A_7(2FN7)
?
[Raw transfer]




2OP_A_6(4PLV)
?
[Raw transfer]




2OP_D_12(4PLV)
?
[Raw transfer]




EDO_A_4(3TL2)
MDH_BACAN
[Raw transfer]




EDO_A_4(3TL2)
MDH_BACAN
[Raw transfer]




PEG_A_11(4CL3)
MDH_CHLAA
[Raw transfer]




EDO_A_2(3TL2)
MDH_BACAN
[Raw transfer]




PEG_D_23(4CL3)
MDH_CHLAA
[Raw transfer]




PEG_A_13(4CL3)
MDH_CHLAA
[Raw transfer]




38 PsiBlast_CBE 97.1168%-142 - C4 -4PLT 11.1 ?
35 PsiBlast_CBE 97.0568%-143 - C4 -4PLV 9.4 ?
3 PsiBlast_PDB 96.9368%-142 - C4 -4PLT 10.8 ?
1 PsiBlast_PDB 96.7069%-146 - C4 -4PLH 9.9 ?
39 PsiBlast_CBE 96.5768%-141 - C4 -4PLT 11.0 ?
30 PsiBlast_CBE 96.5668%-144 - C4 -4PLY - ? -
28 PsiBlast_CBE 96.3368%-150 - C4 -4PLY - ? -
26 PsiBlast_CBE 96.3069%-145 - C4 -4PLH 10.7 ?
24 PsiBlast_CBE 96.2469%-145 - C4 -4PLH 10.0 ?
4 PsiBlast_PDB 96.1968%-150 - C4 -4PLV 9.7 ?
36 PsiBlast_CBE 96.1568%-140 - C4 -4PLV 10.5 ?
37 PsiBlast_CBE 95.9468%-141 - C4 -4PLT 10.6 ?
21 PsiBlast_CBE 95.9369%-145 - C4 -4PLW 10.1 ?
5 PsiBlast_PDB 95.8668%-144 - C4 -4PLY - ? -
23 PsiBlast_CBE 95.7969%-141 - C4 -4PLW 10.3 ?
22 PsiBlast_CBE 95.7469%-140 - C4 -4PLW 10.7 ?
32 PsiBlast_CBE 95.5968%-145 - C4 -4PLY - ? -
33 PsiBlast_CBE 95.5668%-136 - C4 -4PLY - ? -
29 PsiBlast_CBE 95.4968%-138 - C4 -4PLY - ? -
25 PsiBlast_CBE 95.4169%-148 - C4 -4PLH 10.1 ?
34 PsiBlast_CBE 95.3568%-149 - C4 -4PLV 9.5 ?
2 PsiBlast_PDB 95.2169%-138 - C4 -4PLW 10.7 ?
9 PsiBlast_PDB 92.2162%-133 - C4 -4ROS 8.5 MDH_METEP
6 PsiBlast_PDB 92.2059%-138 - C4 -3GVH 5.8 MDH_BRUA2
46 PsiBlast_CBE 91.8959%-139 - C4 -3GVH 6.2 MDH_BRUA2
45 PsiBlast_CBE 91.5459%-136 - C4 -3GVH 6.2 MDH_BRUA2
47 PsiBlast_CBE 91.4059%-137 - C4 -3GVH 6.2 MDH_BRUA2
11 PsiBlast_PDB 90.4852%-136 - C4 -3CZM 10.9 LDH_TOXGO
54 PsiBlast_CBE 89.8452%-132 - C4 -1SOW 11.1 LDH_TOXGO
13 PsiBlast_PDB 89.7352%-133 - C4 -1SOW 11.3 LDH_TOXGO
53 PsiBlast_CBE 89.3252%-132 - C4 -3CZM 10.8 LDH_TOXGO
103 HHSearch 88.6247%-134 - C4 -1PZG 10.9 ?
12 PsiBlast_PDB 88.5752%-140 - C4 -3TL2 2.2 MDH_BACAN
74 PsiBlast_CBE 88.4149%-139 - C4 -4CL3 2.0 MDH_CHLAA
73 PsiBlast_CBE 88.0849%-139 - C4 -4CL3 2.9 MDH_CHLAA
78 PsiBlast_CBE 87.9849%-141 - C4 -1UR5 8.8 MDH_CHLAA
71 PsiBlast_CBE 87.9750%-139 - C4 -1GUZ 9.5 MDH_CHLTE (first)
75 PsiBlast_CBE 87.9249%-132 - C4 -1UXG 10.3 MDH_CHLAA
81 PsiBlast_CBE 87.7749%-132 - C4 -1UXH 10.0 MDH_CHLAA
69 PsiBlast_CBE 87.7150%-139 - C4 -1GUZ 9.3 MDH_CHLTE (first)
100 PsiBlast_CBE 87.6546%-131 - C4 -3OM9 10.7 ?
83 PsiBlast_CBE 87.6249%-140 - C4 -1UXJ 10.1 MDH_CHLAA
76 PsiBlast_CBE 87.4749%-141 - C4 -1GUY 9.4 MDH_CHLAA
85 PsiBlast_CBE 87.3449%-131 - C4 -1UXI 9.8 MDH_CHLAA
104 HHSearch 87.3153%-135 - C4 -3TL2 2.1 MDH_BACAN
80 PsiBlast_CBE 87.2849%-140 - C4 -1UXK 9.1 MDH_CHLAA
20 PsiBlast_PDB 87.2549%-131 - C4 -1UXG 9.4 MDH_CHLAA
82 PsiBlast_CBE 87.1849%-132 - C4 -1UXH 9.3 MDH_CHLAA
16 PsiBlast_PDB 86.7350%-134 - C4 -1GUZ 8.8 MDH_CHLTE (first)
77 PsiBlast_CBE 86.6249%-141 - C4 -1UR5 7.6 MDH_CHLAA
19 PsiBlast_PDB 86.5949%-143 - C4 -1GUY 8.5 MDH_CHLAA
91 PsiBlast_CBE 86.5150%-133 - C4 -4ND2 10.9 ?
86 PsiBlast_CBE 86.5049%-131 - C4 -1UXI 9.2 MDH_CHLAA
79 PsiBlast_CBE 86.4949%-139 - C4 -1UXK 8.8 MDH_CHLAA
90 PsiBlast_CBE 86.3850%-133 - C4 -4ND3 10.3 ?
84 PsiBlast_CBE 86.3849%-139 - C4 -1UXJ 9.7 MDH_CHLAA
101 HHSearch 86.3151%-133 - C4 -1GUZ 8.8 MDH_CHLTE (first)
93 PsiBlast_CBE 86.1350%-132 - C4 -4ND1 10.3 ?
88 PsiBlast_CBE 85.9450%-131 - C4 -4ND4 10.3 ?
96 PsiBlast_CBE 85.9250%-133 - C4 -2FN7 9.7 ?
92 PsiBlast_CBE 85.7650%-133 - C4 -4ND2 10.3 ?
94 PsiBlast_CBE 85.7050%-130 - C4 -4ND1 10.0 ?
72 PsiBlast_CBE 85.5749%-140 - C4 -1GV0 7.2 MDH_CHLTE
89 PsiBlast_CBE 85.4150%-133 - C4 -4ND3 10.3 ?
87 PsiBlast_CBE 85.2650%-134 - C4 -4ND4 10.3 ?
70 PsiBlast_CBE 85.0150%-134 - C4 -1GUZ 9.0 MDH_CHLTE (first)
95 PsiBlast_CBE 84.6450%-135 - C4 -2FN7 9.8 ?
18 PsiBlast_PDB 84.5649%-133 - C4 -1GV0 8.9 MDH_CHLTE
97 PsiBlast_CBE 79.3543%-137 - C4 -1OC4 9.9 LDH_PLABA
98 PsiBlast_CBE 78.5743%-137 - C4 -1OC4 9.4 LDH_PLABA