@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0266: (2015-11-29 )
MSFFFKRTFGSINKKIIKSFRKIVEQINALETKMQSLSDEELADKTEEFKRELKNGKTLNDLLVPAFAVVREASRRFLNMRHFDVQLIGGMVLHNGMVSEMKTGEGKTLVATLAAYLNSLEGKGVHVVTVNDYLAKRDTEWMSKLYNSLGVSVAFITNDLTDEERKEAYSADIVYSTNNELAFDYLRDNMKFSREDMVQRGFNYAIVDEVDSILIDEARTPLIISGPVEENNQIYKHIDKIVTKLVDSDYEVDEKGRAVFLTEDGISQVEELLRSYNLISEKSSLYDAGNMIMTHYIDQALRAHKLFTADKDYIVKDGKVVIIDEFTGRMMEGRRYSDGLHQALEAKENLEIQYENQTLASVTFQNYFRMYNKLSGMTGTAATEAEELRDIYRLNVVKIPTNVTVKRIDVDDEIYGTEKEKFNAVLKFIKECHKRLQPVLVGTVSIENSEKLSALLRNHFLRHSVLNARYHEQEAYIIAQAGVPGNITIATNMAGRGTDIQLGGNAEMIAKVELKKIKNADEREKKYQEIIERVKRDKEIAMKAGGLCVIGTERHESRRIDDQLRGRSGRQGDPGLSKFFLSLEDDLMRIFGSDRMRSFLKRVGLKNNEAIHHPWINKALEKAQKKVEARNYDVRKSLLKFDDVINNQRKVIFEQRNHILGNEINDLFEVYSEVNKSVMESIVQGGYYEDYVEDIAKEFHIRYGITLDKKDLAKFLNKQEALDYINGKVKEFFTEKEKYFNGQQTTDLWNTIVKQVMIMTLDHLWREHLSILESLRQSIGLRAMGQKDPLNEFKREAFLIFECMLERGKELTIHRLAHFKLVDNQEVGGRLHPTRKDNLPKVSRNDKCPCNSGKKYKHCHGAVTVMN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]
48 Fugue 91.1949% -68 - C2 -2IPC - SECA_THET8 -
8 PsiBlast_PDB 90.7547% -76 - C2 -1NL3 - SECA1_MYCTU -
28 HHSearch 90.2846% -74 - C2 -1NKT - SECA1_MYCTU -
21 PsiBlast_CBE 90.1350% -82 - C2 -2FSI - SECA_ECOLI -
26 HHSearch 89.9849% -64 * C2 *2IPC - SECA_THET8 -
7 PsiBlast_PDB 89.9247% -75 - C2 -1NKT - SECA1_MYCTU -
22 PsiBlast_CBE 89.8047% -78 - C2 -1NKT - SECA1_MYCTU -
4 PsiBlast_PDB 89.4250% -74 - C2 -2VDA - SECA_ECOLI -
2 PsiBlast_PDB 89.1350% -80 - C2 -2FSH - SECA_ECOLI -
3 PsiBlast_PDB 88.9250% -78 - C2 -2FSI - SECA_ECOLI -
29 HHSearch 88.3151% -77 - C2 -2FSF - SECA_ECOLI -
1 PsiBlast_PDB 88.0250% -78 - C2 -2FSF - SECA_ECOLI -
5 PsiBlast_PDB 86.8948% -79 - C2 -2FSG - SECA_ECOLI -
47 Fugue 86.3447% -65 - C2 -1M6N - SECA_BACSU -
6 PsiBlast_PDB 86.2245% -66 - C2 -3IQY - SECA_BACSU -
27 HHSearch 86.0847% -75 - C2 -1TF5 - SECA_BACSU -
23 PsiBlast_CBE 85.0447% -70 - C2 -3JV2 - SECA_BACSU -
10 PsiBlast_PDB 84.8847% -70 - C2 -3JV2 - SECA_BACSU -
17 PsiBlast_PDB 84.8442% -71 - C2 -3JUX 5.5 SECA_THEMA
15 PsiBlast_PDB 84.7742% -72 - C2 -4YS0 7.1 SECA_THEMA