@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0022: (2016-03-11 )
MKALLLKTSVWLVLLFSVMGLWQVSNAAEQYTPIKAHVVTTIDKATTDKQQVTPTKEAAHQFGEEAATNVSASAQGTADEINNKVTSNAFSNKPSTAVSTKVNETHDVDTQQASTQKPTQSATFTLSNAKTASLSPRMFAANVPQTTTHKILHTNDIHGRLAEEKGRVIGMAKLKTIKEQEKPDLMLDAGDAFQGLPLSNQSKGEEMAKAMNAVGYDAMAVGNHEFDFGYDQLKKLEGMLDFPMLSTNVYKDGKRAFKPSTIVTKNGIRYGIIGVTTPETKTKTRPEGIKGVEFRDPLQSVTAEMMRIYKDVDTFVVISHLGIDPSTQETWRGDYLVKQLSQNPQLKKRITVIDGHSHTVLQNGQIYNNDALAQTGTALANIGKVTFNYRNGEVSNIKPSLINVKDVENVTPNKALAEQINQADQTFRAQTAEVIIPNNTIDFKGERDDVRTRETNLGNAIADAMEAYGVKNFSKKTDFAVTNGGGIRASIAKGKVTRYDLISVLPFGNTIAQIDVKGSDVWTAFEHSLGAPTTQKDGKTVLTANGGLLHISDSIRVYYDMNKPSGKRINAIQILNKETGKFENIDLKRVYHVTMNDFTASGGDGYSMFGGPREEGISLDQVLASYLKTANIAKYDTTEPQRMLLGKPAVSEQPAKGQQGSKGSESGKDVQPIGDDKAMNPAKQPATGKVVLLPTHRGTVSSGTEGSGRTLEGATVSSKSGNQLVRMSVPKGSAHEKQLPKTGTNQSSSPAAMFVLVAGIGLIATVRRRKAS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A12_A_4(4H2I)
5NTD_HUMAN
[Raw transfer]




THM_A_5(2Z1A)
?
[Raw transfer]




THM_A_5(2Z1A)
?
[Raw transfer]




URI_A_5(3IVD)
?
[Raw transfer]




EPE_A_4(3JYF)
?
[Raw transfer]




ADN_A_9(1HO5)
USHA_ECOLI
[Raw transfer]




CIT_A_5(3GVE)
NTPES_BACSU
[Raw transfer]




FMT_A_9(3C9F)
?
[Raw transfer]




DA_A_11(1II7)
MRE11_PYRFU
[Raw transfer]




25 HHSearch 94.3932% -50 - C2 -2Z1A 6.1 ?
17 PsiBlast_PDB 90.6627% -53 - C2 -3IVD 6.0 ?
1 PsiBlast_PDB 90.5831% -44 - C2 -2Z1A 6.1 ?
26 HHSearch 89.2328% -42 - C2 -1HP1 - USHA_ECOLI -
13 PsiBlast_PDB 88.9828% -50 - C2 -4H1Y - 5NTD_HUMAN -
16 PsiBlast_PDB 88.9128% -52 - C2 -4H2I 6.9 5NTD_HUMAN
2 PsiBlast_PDB 88.7928% -33 - C2 -1HP1 - USHA_ECOLI -
14 PsiBlast_PDB 88.6128% -51 - C2 -4H2F - 5NTD_HUMAN -
12 PsiBlast_PDB 88.5028% -53 - C2 -4H2B - 5NTD_HUMAN -
15 PsiBlast_PDB 88.3828% -49 - C2 -4H2G - 5NTD_HUMAN -
27 HHSearch 88.0826% -50 - C2 -3IVE - ? -
10 PsiBlast_PDB 87.8227% -33 - C2 -1OI8 - USHA_ECOLI -
8 PsiBlast_PDB 87.2927% -34 - C2 -1OID - USHA_ECOLI -
11 PsiBlast_PDB 87.2528% -49 - C2 -4H1S - 5NTD_HUMAN -
9 PsiBlast_PDB 87.0227% -33 - C2 -1OIE - USHA_ECOLI -
3 PsiBlast_PDB 86.7727% -36 - C2 -4WWL - USHA_ECOLI -
7 PsiBlast_PDB 86.7527% -34 - C2 -1HPU - USHA_ECOLI -
5 PsiBlast_PDB 86.4827% -31 - C2 -1USH - USHA_ECOLI -
6 PsiBlast_PDB 86.1027% -34 - C2 -1HO5 5.5 USHA_ECOLI
4 PsiBlast_PDB 82.6427% -33 - C2 -2USH - USHA_ECOLI -