@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0147: (2016-03-12 )
MAHLSVKLRLLILALIDSLIVTFSVFVSYYILEPYFKTYSVKLLILAAISLFISHHISAFIFNMYHRAWEYASVSELILIVKAVTTSIVITMVVVTIVTGNRPFFRLYLITWMMHLILIGGSRLFWRIYRKYLGGKSFNKKPTLVVGAGQAGSMLIRQMLKSDEMKLEPVLAVDDDEHKRNITITEGVKVQGKIADIPELVRKYKIKKIIIAIPTIGQERLKEINNICHMDGVELLKMPNIEDVMSGELEVNQLKKVEVEDLLGRDPVELDMDMISNELTNKTILVTGAGGSIGSEICRQVCNFYPERIILLGHGENSIYLINRELRNRFGKNVDIVPIIADVQNRARMFEIMETYKPYAVYHAAAHKHVPLMEDNPEEAVHNNILGTKNTAEAAKNAEVKKFVMISTDKAVNPPNVMGASKRIAEMIIQSLNDETHRTNFVAVRFGNVLGSRGSVIPLFKSQIEEGGPVTVTHPEMTRYFMTIPEASRLVLQAGALAEGGEVFVLDMGEPVKIVDLARNLIKLSGKKEDDIRITYTGIRPGEKMFEELMNKDEVHPEQVFEKIYRGKVQHMKCNEVEAIIQDIVNDFSKEKIINYANGKKGDNYVR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDZ_B_20(3W1V)
?
[Raw transfer]



UD1_B_6(2GN4)
PSEB_HELPY
[Raw transfer]



GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]



UDZ_A_11(3W1V)
?
[Raw transfer]



UPG_A_10(2GN9)
PSEB_HELPY
[Raw transfer]



UD1_A_10(2GN6)
PSEB_HELPY
[Raw transfer]



UD1_B_16(2GN6)
PSEB_HELPY
[Raw transfer]



UDP_B_16(2GN8)
PSEB_HELPY
[Raw transfer]



UDP_A_10(2GN8)
PSEB_HELPY
[Raw transfer]



GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN9)
PSEB_HELPY
[Raw transfer]



NAP_A_2(3VVC)
?
[Raw transfer]



NAP_A_2(4G5H)
?
[Raw transfer]
7 PsiBlast_PDB 92.4536% -63 - C1 -4G5H 9.1 ?
26 PsiBlast_CBE 92.3636% -63 - C1 -3W1V 7.0 ?
6 PsiBlast_PDB 91.9336% -61 - C1 -3W1V 7.3 ?
8 PsiBlast_PDB 90.4636% -67 - C1 -3VVC 8.5 ?
9 PsiBlast_PDB 88.4636% -60 - C1 -4J2O - ? -
1 PsiBlast_PDB 86.9134% -65 - C1 -2GN4 11.5 PSEB_HELPY
24 PsiBlast_CBE 86.2334% -67 - C1 -2GN6 6.1 PSEB_HELPY
5 PsiBlast_PDB 86.1134% -65 - C1 -2GNA 5.4 PSEB_HELPY
4 PsiBlast_PDB 85.5234% -60 - C1 -2GN9 5.7 PSEB_HELPY
23 PsiBlast_CBE 85.4034% -62 - C1 -2GN8 3.7 PSEB_HELPY
25 PsiBlast_CBE 85.3434% -64 - C1 -2GN4 8.2 PSEB_HELPY
22 PsiBlast_CBE 85.2934% -63 - C1 -2GN9 9.9 PSEB_HELPY
31 Fugue 84.8031% -54 - C1 -2GN4 11.4 PSEB_HELPY
2 PsiBlast_PDB 84.7434% -64 - C1 -2GN6 6.1 PSEB_HELPY
3 PsiBlast_PDB 84.5434% -62 - C1 -2GN8 4.6 PSEB_HELPY
21 PsiBlast_CBE 84.4134% -63 - C1 -2GNA 5.3 PSEB_HELPY
56 HHSearch 78.6320% -55 - C1 -1KEW - RMLB_SALTY -
58 HHSearch 78.5320% -56 - C1 -1RKX - ? -
33 Fugue 77.7226% -56 - C1 -4TQG - ? -
51 HHSearch 77.6522% -60 - C1 -2HUN - ? -