@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA0224: (2016-03-13 )
MTINKVTVLGAGTMGAQLAALFVNAGLKVKLLDIVVDKNDPNLIAKKSYDKITDKKRPLLFDLNLVSHLTYGNFDDDLVNDDADLYIEAVKEDIEIKHAVWQQVLQHAKEDALFATNTSGIPINAIAQAFNEKDQERFFGLHFFNPPRIMKLVELIPTSHTKESIILDVKNFAQNVLGKGVIVVNDVPGFVANRVGTQTMNDIMYRAEQHKLSIVDVDALTGQAIGRPKTGTYALSDLVGLDIAVSVIKGMQQVPEETPYFHDVKIVNTLFDNGALGRKTKQGFYKKDKETKARLVYDVEKQDYVPVSQPQLPILNEFNKDLVHNLDVIFNAQDEAGLFLWETLRNNFYYSAINVPKATDDFRDIDRALVWGFNWKLGPFQLWDAMGYERVKTRMEDELGDLPQWISDLDGGFYKQDETIEYATPVSHFVKDELWDKGDAKLSVTHDDQLLLKLQSKNNVITDEFNDALVDAIDLLENDHYTSMVIYADGNNFSVGANLFLMKKAHEDGLVDDVVAQSIDKLHYSFNRLKYSLKPVVTAVQGRALGGGCELVLYSPIVVAASETYIGLVEAGVGLLPSGGGLAEMADRILRTSHKFDDKQASMTKVLTNIAFAKVSTNAFEARRYGYLRDTDTIIFNTAQRVEVALKRAKYEAETNYIPNPRHQYIALGEDFKALIQGQLDAQRRGHFISDHDYHIALNIATILAGGDLPRNTFINQRYIQSLEKIGFIDLLKSKKSYERIAHMLKTGKPLRN

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_C_7(4KUG)
?
[Raw transfer]



NAD_B_6(4KUG)
?
[Raw transfer]



NAI_B_4(1F17)
HCDH_HUMAN
[Raw transfer]



NAI_A_3(1F17)
HCDH_HUMAN
[Raw transfer]



NAD_A_5(4KUG)
?
[Raw transfer]



NAD_D_8(4KUG)
?
[Raw transfer]



GOL_A_4(3RQS)
HCDH_HUMAN
[Raw transfer]



GOL_A_5(3RQS)
HCDH_HUMAN
[Raw transfer]



NAD_A_3(2HDH)
HCDH_HUMAN
[Raw transfer]



3HC_C_3(1F12)
HCDH_HUMAN
[Raw transfer]
65 HHSearch 97.1625% -66 - C1 -3MOG - PAAH_ECOLI -
67 HHSearch 85.2824% -66 - C1 -1ZCJ - ECHP_RAT -
70 HHSearch 79.4232% -69 - C1 -1F0Y - HCDH_HUMAN -
2 PsiBlast_PDB 79.4031% -77 - C1 -4J0F - HCDH1_CAEEL -
38 PsiBlast_CBE 79.2131% -77 - C1 -1IL0 - HCDH_HUMAN -
3 PsiBlast_PDB 78.7531% -78 - C1 -3HDH - HCDH_PIG -
64 HHSearch 78.4222% -68 - C1 -2WTB - MFP2_ARATH -
15 PsiBlast_PDB 78.3531% -81 - C1 -1LSJ - HCDH_HUMAN -
40 PsiBlast_CBE 78.2331% -79 - C1 -1M75 - HCDH_HUMAN -
21 PsiBlast_CBE 77.9431% -71 - C1 -3HDH - HCDH_PIG -
14 PsiBlast_PDB 77.7831% -74 - C1 -1IL0 - HCDH_HUMAN -
8 PsiBlast_PDB 77.7531% -77 - C1 -1F0Y - HCDH_HUMAN -
17 PsiBlast_PDB 77.6031% -77 - C1 -1M75 - HCDH_HUMAN -
63 HHSearch 77.4522% -70 - C1 -3K6J - ? -
16 PsiBlast_PDB 77.4031% -77 - C1 -1M76 - HCDH_HUMAN -
24 PsiBlast_CBE 77.3131% -84 - C1 -3HAD - HCDH_HUMAN -
7 PsiBlast_PDB 77.2631% -79 - C1 -3HAD - HCDH_HUMAN -
35 PsiBlast_CBE 77.1431% -78 - C1 -4KUH - ? -
23 PsiBlast_CBE 77.1331% -83 - C1 -1F12 - HCDH_HUMAN -
27 PsiBlast_CBE 77.0331% -79 - C1 -4KUG 8.8 ?
9 PsiBlast_PDB 76.6331% -80 - C1 -4KUG 9.8 ?
28 PsiBlast_CBE 75.9131% -80 - C1 -4KUG 9.1 ?
26 PsiBlast_CBE 75.7831% -77 - C1 -4KUG 9.2 ?
6 PsiBlast_PDB 75.6431% -78 - C1 -1F17 9.0 HCDH_HUMAN
22 PsiBlast_CBE 75.3731% -81 - C1 -1F17 9.0 HCDH_HUMAN
4 PsiBlast_PDB 74.8031% -75 - C1 -1F12 6.2 HCDH_HUMAN
19 PsiBlast_PDB 62.9633% -70 - C1 -3RQS 2.8 HCDH_HUMAN
18 PsiBlast_PDB 61.4633% -70 - C1 -2HDH 5.3 HCDH_HUMAN