@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1078: (2016-03-21 )
MSFFKRLKDKFATNKENEEVKSLREEQGQDKLEDTHSEGSTQDVNDLAENAEVKKKPRKLSEADFDDDGLISIEDFEEIEAQKMGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMTLTEELRMEAQRRNIQDTEDLREVIVEKIVEIYHQEDDNSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYKMEGKKVMLAAGDTFRAGAIDQLKVWGERVGVDVISQSEGSDPAAVMYDAINAAKNKGVDILICDTAGRLQNKTNLMQELEKVKRVINRAVPDAPHEALLCLDATTGQNALSQARNFKEVTNVTGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEQLDDLQPFNPESYVYGLFADMIEQNDEITTVENDQIVTEEKDDNHGAK

Atome Classification :

(50 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GCP_A_3(1OKK)
FTSY_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GDP_A_8(4C7O)
FTSY_ECOLI
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GOL_C_16(3DMD)
?
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GOL_A_15(3DMD)
?
[Raw transfer]




GDP_C_14(4C7O)
FTSY_ECOLI
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




FMT_A_5(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]




GDP_D_18(4C7O)
FTSY_ECOLI
[Raw transfer]




EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]




ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]




82 HHSearch 95.7353% -97 - C6 -1VMA - ? -
1 PsiBlast_PDB 94.4649%-107 - C6 -2YHS - FTSY_ECOLI -
7 PsiBlast_PDB 94.4351% -91 - C6 -1VMA - ? -
23 PsiBlast_CBE 94.3551% -95 - C6 -1VMA 3.8 ?
4 PsiBlast_PDB 94.2750%-105 - C6 -1FTS - FTSY_ECOLI -
2 PsiBlast_PDB 93.9549%-102 - C6 -2QY9 - FTSY_ECOLI -
8 PsiBlast_PDB 93.9144%-110 - C6 -1ZU4 - FTSY_MYCMS -
72 HHSearch 93.7448%-105 - C6 -2YHS 2.5 FTSY_ECOLI
5 PsiBlast_PDB 93.5750%-106 - C6 -3ZN8 - FTSY_ECOLI -
9 PsiBlast_PDB 93.3044%-110 - C6 -1ZU5 - FTSY_MYCMS -
3 PsiBlast_PDB 92.4949%-104 - C6 -2XXA - FTSY_ECOLI -
21 PsiBlast_CBE 92.1549%-103 - C6 -2XXA - FTSY_ECOLI -
22 PsiBlast_CBE 92.1451%-108 - C6 -4C7O 3.2 FTSY_ECOLI
73 HHSearch 91.1140%-109 - C6 -3B9Q - CFTSY_ARATH -
6 PsiBlast_PDB 90.8351%-102 - C6 -4C7O 6.9 FTSY_ECOLI
12 PsiBlast_PDB 89.9940%-108 - C6 -3B9Q - CFTSY_ARATH -
71 HHSearch 88.4640%-106 * C6 *2OG2 - CFTSY_ARATH -
85 HHSearch 88.3044%-111 - C6 -1ZU4 - FTSY_MYCMS -
11 PsiBlast_PDB 88.2540%-106 - C6 -2OG2 - CFTSY_ARATH -
86 HHSearch 88.0147%-103 - C6 -1RJ9 2.5 FTSY_THEAQ
30 PsiBlast_CBE 86.8646% -97 - C6 -1RJ9 2.5 FTSY_THEAQ
17 PsiBlast_PDB 86.3347% -99 - C6 -2Q9C 6.5 FTSY_THEAQ
20 PsiBlast_PDB 85.8147%-107 - C6 -2IYL 7.2 FTSY_THEAQ
16 PsiBlast_PDB 85.1347% -98 - C6 -2Q9B 5.8 FTSY_THEAQ
27 PsiBlast_CBE 85.1047% -98 - C6 -2J7P 2.7 FTSY_THEAQ
13 PsiBlast_PDB 84.9947%-102 - C6 -1OKK 9.1 FTSY_THEAQ
18 PsiBlast_PDB 84.9547% -98 - C6 -2J7P 2.6 FTSY_THEAQ
79 HHSearch 78.3035% -98 - C6 -3DM5 7.6 SRP54_PYRFU
51 PsiBlast_CBE 78.2837% -80 - C6 -2J7P 9.3 SRP54_THEAQ
49 PsiBlast_CBE 77.7937% -82 - C6 -3NG1 3.7 SRP54_THEAQ
52 PsiBlast_CBE 77.7337% -78 - C6 -2J7P 9.3 SRP54_THEAQ
48 PsiBlast_CBE 77.6637% -79 - C6 -1JPJ 7.6 SRP54_THEAQ
57 PsiBlast_CBE 77.5237% -79 - C6 -1NG1 7.6 SRP54_THEAQ
34 PsiBlast_CBE 77.4939% -93 - C6 -3DMD 2.3 ?
65 PsiBlast_CBE 77.4532% -94 - C6 -4C7O 3.0 SRP54_ECOLI
50 PsiBlast_CBE 77.3837% -82 - C6 -3NG1 3.7 SRP54_THEAQ
44 PsiBlast_CBE 77.3537% -80 - C6 -1O87 7.1 SRP54_THEAQ
36 PsiBlast_CBE 77.3437% -89 - C6 -3DM5 7.5 SRP54_PYRFU
46 PsiBlast_CBE 77.2837% -76 - C6 -1JPN 6.5 SRP54_THEAQ
33 PsiBlast_CBE 77.0639% -93 - C6 -3DMD 3.4 ?
35 PsiBlast_CBE 77.0237% -88 - C6 -3DM5 7.0 SRP54_PYRFU
43 PsiBlast_CBE 77.0137% -78 - C6 -1O87 7.1 SRP54_THEAQ
56 PsiBlast_CBE 76.8437% -78 - C6 -1OKK 2.4 SRP54_THEAQ
58 PsiBlast_CBE 76.6137% -79 - C6 -2NG1 6.3 SRP54_THEAQ
47 PsiBlast_CBE 76.5737% -78 - C6 -1JPN 7.5 SRP54_THEAQ
32 PsiBlast_CBE 76.5239% -94 - C6 -3DMD 2.3 ?
66 PsiBlast_CBE 76.4032% -95 - C6 -4C7O 2.7 SRP54_ECOLI
31 PsiBlast_CBE 76.3439% -90 - C6 -3E70 7.1 ?
80 HHSearch 75.3440% -88 - C6 -3E70 7.1 ?
59 PsiBlast_CBE 73.8937% -71 - C6 -1RJ9 9.3 SRP54_THEAQ