@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1272: (2016-03-24 )
MLVAVVKELKQGEGRVACTPENVRKLTDAGHKVIVEKNAGIGSGFSNDMYEKEGAKIVTHEQAWEADLVIKVKEPHESEYQYFKKNQIIWGFLHLASSKEIVEKMQEVGVTAISGETIIKNGKAELLAPMSAIAGQRSAIMGAYYSEAQHGGQGTLVTGVHENVDIPGSTYVIFGGGVAATNAANVALGLNAKVIIIELNDDRIKYLEDMYAEKDVTVVKSTPENLAEQIKKADVFISTILIPGAKPPKLVTREMVKSMKKGSVLIDIAIDQGGTIETIRPTTISDPVYEEEGVIHYGVPNQPGAVPRTSTMALAQGNIDYILEICDKGLEQAIKDNEALSTGVNIYQGQVTNQGLASSHDLDYKEILNVIE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_4(2VHV)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHZ)
DHA_MYCTU
[Raw transfer]



NAI_B_4(2VHZ)
DHA_MYCTU
[Raw transfer]



NAI_A_3(2VHV)
DHA_MYCTU
[Raw transfer]



NAD_C_6(2VOJ)
DHA_MYCTU
[Raw transfer]



NAD_E_8(2VOJ)
DHA_MYCTU
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



NAD_A_4(2VOJ)
DHA_MYCTU
[Raw transfer]



NAD_G_7(1PJC)
?
[Raw transfer]



GOL_A_6(4LMP)
?
[Raw transfer]



GOL_A_4(4LMP)
?
[Raw transfer]



PYR_A_7(1SAY)
?
[Raw transfer]



2OP_C_7(2VOJ)
DHA_MYCTU
[Raw transfer]



2OP_A_5(2VOJ)
DHA_MYCTU
[Raw transfer]
56 HHSearch 92.5241%-100 - C1 -1PJC 9.0 ?
29 PsiBlast_CBE 91.7538% -89 - C1 -2VHW - DHA_MYCTU -
30 PsiBlast_CBE 91.4838% -86 - C1 -2VHW - DHA_MYCTU -
5 PsiBlast_PDB 91.3338% -88 - C1 -2VHW - DHA_MYCTU -
4 PsiBlast_PDB 91.0138% -86 - C1 -4LMP 3.3 ?
6 PsiBlast_PDB 90.9438% -88 - C1 -2VHX - DHA_MYCTU -
23 PsiBlast_CBE 90.5938% -84 - C1 -2VHZ 10.4 DHA_MYCTU
7 PsiBlast_PDB 90.5438% -86 - C1 -2VHZ 9.6 DHA_MYCTU
59 HHSearch 90.5144% -86 - C1 -2EEZ - ? -
8 PsiBlast_PDB 90.4638% -85 - C1 -2VHV 9.3 DHA_MYCTU
26 PsiBlast_CBE 90.4438% -86 - C1 -2VHW - DHA_MYCTU -
25 PsiBlast_CBE 90.4138% -83 - C1 -2VHX - DHA_MYCTU -
24 PsiBlast_CBE 90.3038% -84 - C1 -2VHX - DHA_MYCTU -
10 PsiBlast_PDB 90.2540% -98 - C1 -1SAY 3.7 ?
31 PsiBlast_CBE 90.2338% -85 - C1 -2VHV 8.7 DHA_MYCTU
28 PsiBlast_CBE 90.1438% -87 - C1 -2VHW - DHA_MYCTU -
27 PsiBlast_CBE 90.1338% -84 - C1 -2VHW - DHA_MYCTU -
9 PsiBlast_PDB 90.1040%-100 - C1 -1PJB - ? -
11 PsiBlast_PDB 90.0040%-102 - C1 -1PJC 9.0 ?
3 PsiBlast_PDB 89.2738% -80 - C1 -2VOJ 4.6 DHA_MYCTU
22 PsiBlast_CBE 89.0938% -81 - C1 -2VOJ 7.5 DHA_MYCTU
46 Fugue 88.9040% -97 - C1 -1PJC 8.5 ?
21 PsiBlast_CBE 88.6338% -79 - C1 -2VOJ 8.5 DHA_MYCTU
49 Fugue 65.7943%-116 - C1 -1PJC 8.3 ?
51 Fugue 63.6545%-110 - C1 -1PJC 7.9 ?