@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1287: (2016-03-24 )
MKTTIKQAKDHLNQDVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKSEVDEEVFKLAKEIAQESSLYVTGTITEDNRSDLGYEMQVKSIEVISEAHDYPITPKNHGTEFLMDHRHLWLRSKKQHAVMKIRNEVIRATYEFFNKDGFTKVDPPILTASAPEGTSELFHTKYFDQDAFLSQSGQLYLEAAAMAHGKVFSFGPTFRAEKSKTRRHLIEFWMIEGEMAFTNHAESLEIQEQYVTHVVKSVLENCKLELKILERDTSKLEKVATPFPRISYDDAIEFLKAEGFDDIEWGEDFGAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPENEETVLCADLIAPEGYGEIIGGSERVDDLELLEQRVKEHGLDEEAYSYYLDLRRYGSVPHCGFGLGLERTVAWISGVEHVRETAPFPRLLNRLYP

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



NB8_A_3(2XTI)
?
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]



ATP_B_10(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_8(2XTI)
?
[Raw transfer]



ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]



EPE_B_8(1WYD)
SYDND_SULTO
[Raw transfer]
2 PsiBlast_PDB 98.5045% -79 - C4 -1X55 7.8 SYN_PYRHO
1 PsiBlast_PDB 98.4145% -82 - C4 -1X54 8.2 SYN_PYRHO
29 HHSearch 97.9646% -80 - C4 -1X54 8.2 SYN_PYRHO
3 PsiBlast_PDB 96.1145% -90 - C4 -1X56 - SYN_PYRHO -
4 PsiBlast_PDB 89.2936% -75 - C4 -3NEL 2.7 SYD_THEKO
5 PsiBlast_PDB 89.0736% -76 - C4 -3NEM 7.9 SYD_THEKO
7 PsiBlast_PDB 89.0536% -78 - C4 -1B8A 6.8 SYD_THEKO
22 PsiBlast_CBE 88.8136% -76 - C4 -1B8A 7.3 SYD_THEKO
6 PsiBlast_PDB 88.7436% -74 - C4 -3NEN - SYD_THEKO -
21 PsiBlast_CBE 88.6336% -73 - C4 -3NEM 7.2 SYD_THEKO
31 HHSearch 88.1735% -74 - C4 -3NEM 7.9 SYD_THEKO
24 PsiBlast_CBE 87.4932% -81 - C4 -3M4P - ? -
26 PsiBlast_CBE 87.4532% -82 - C4 -3M4P - ? -
10 PsiBlast_PDB 87.3932% -82 - C4 -3M4Q - ? -
9 PsiBlast_PDB 87.2632% -81 - C4 -3M4P - ? -
28 HHSearch 86.7835% -76 - C4 -1WYD 1.9 SYDND_SULTO
30 HHSearch 86.5433% -86 - C4 -3M4P - ? -
23 PsiBlast_CBE 85.8135% -80 - C4 -1WYD 2.3 SYDND_SULTO
25 PsiBlast_CBE 85.4132% -82 - C4 -3M4P - ? -
12 PsiBlast_PDB 84.9932% -80 - C4 -2XTI 8.2 ?
8 PsiBlast_PDB 84.9535% -78 - C4 -1WYD 2.0 SYDND_SULTO
11 PsiBlast_PDB 84.7532% -82 - C4 -2XGT 7.9 ?
27 PsiBlast_CBE 84.4632% -80 - C4 -2XTI 6.4 ?
36 HHSearch 84.3533% -76 - C4 -2XGT 7.9 ?
48 Fugue 83.4935% -78 - C4 -1B8A 6.9 SYD_THEKO