@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1322: (2016-03-24 )
MMSRLNSVVIKLWLTIILIVTTVLILLSIALITFMQYYFTQETENAIREDARRISSLVEQSHNKEEAIKYSQTLIENPGGLMIINNKHRQSTASLSNIKKQMLNEVVNNDHFDDVFDKGKSVTRNVTIKEKGSSQTYILLGYPTKAQKNSHSKYSGVFIYKDLKSIEDTNNAITIITIITAVIFLTITTVFAFFLSSRITKPLRRLRDQATRVSEGDYSYKPSVTTKDEIGQLSQAFNQMSTEIEEHVDALSTSKNIRDSLINSMVEGVLGINESRQIILSNKMANDIMDNIDEDAKAFLLRQIEDTFKSKQTEMRDLEMNARFFVVTTSYIDKIEQGGKSGVVVTVRDMTNEHNLDQMKKDFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIKESLAVVLDESKRLNRLVNELLNVARMDAEGLSVNKEVQPIAALLDKMKIKYRQQADDLGLNMTFNYCKKRVWSYDMDRMDQVLTNLIDNASRYTKPGDEIAITCDENESEDILYIKDTGTGIAPEHLQQVFDRFYKVDAARTRGKQGTGLGLFICKMIIEEHGGSIDVKSELGKGTTFIIKLPKPE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AN2_B_4(4U7O)
?
[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ATP_A_4(3SL2)

[Raw transfer]



ADP_A_7(3DGE)
?
[Raw transfer]



ADP_A_3(4JAS)
?
[Raw transfer]



ADP_A_8(4JAV)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ADP_B_8(3DGE)
?
[Raw transfer]



ADP_B_13(4JAV)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(2C2A)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]
57 Fugue 87.4329% -47 - C2 -4I5S - ? -
1 PsiBlast_PDB 85.9530% -53 - C2 -4I5S - ? -
7 PsiBlast_PDB 83.5637% -65 - C2 -4JAS 7.9 ?
22 PsiBlast_CBE 83.3637% -67 - C2 -4JAV 7.1 ?
5 PsiBlast_PDB 83.1337% -68 - C2 -4JAV 8.1 ?
8 PsiBlast_PDB 82.4337% -74 - C2 -4JAU 6.6 ?
3 PsiBlast_PDB 82.2436% -76 - C2 -4U7O 9.4 ?
4 PsiBlast_PDB 81.7037% -59 - C2 -3DGE 6.8 ?
6 PsiBlast_PDB 81.6037% -74 - C2 -2C2A 6.7 ?
23 PsiBlast_CBE 81.1037% -60 - C2 -3DGE 7.5 ?
37 HHSearch 80.6736% -72 - C2 -2C2A 6.7 ?
2 PsiBlast_PDB 77.9136% -80 - C2 -4U7N - ? -
9 PsiBlast_PDB 76.4233% -52 - C2 -4Q20 - DIVL_CAUCR -
35 HHSearch 75.7424% -67 - C2 -3A0R - ? -
14 PsiBlast_PDB 75.0924% -61 - C2 -3A0R - ? -
21 PsiBlast_CBE 74.2136% -58 - C2 -4U7O 9.9 ?
11 PsiBlast_PDB 73.0727% -53 - C2 -4BIW - CPXA_ECOLI -
17 PsiBlast_PDB 72.7128% -51 - C2 -4CB0 - CPXA_ECOLI -
16 PsiBlast_PDB 72.4328% -60 - C2 -4BIV - CPXA_ECOLI -
12 PsiBlast_PDB 71.7227% -59 - C2 -4BIX - CPXA_ECOLI -
46 HHSearch 67.0935% -67 * C2 *3SL2 7.9
10 PsiBlast_PDB 57.5949% -41 - C2 -3SL2 7.9