@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2051: (2016-03-31 )
MKSLILAEKPSVARDIADALQINQKRNGYFENNQYIVTWALGHLVTNATPEQYDKNLKEWRLEDLPIIPKYMKTVVIGKTSKQFKTVKALILDNKVKDIIIATDAGREGELVARLILDKVGNKKPIRRLWISSVTKKAIQQGFKNLKDGRQYNDLYYAALARSEADWIVGINATRALTTKYDAQLSLGRVQTPTIQLVNTRQQEINQFKPQQYFTLSLTVKGFDFQLESNQRYTNKETLEQMVNNLKNVDGKIKSVATKHKKSYPQSLYNLTDLQQDMYRRYKIGPKETLNTLQSLYERHKVVTYPRTDSNYLTTDMVDTMKERIQATMATTYKDQARPLMSKTFSSKMSIFNNQKVSDHHAIIPTEVRPVMSDLSNRELKLYDMIVERFLEALMPPHEYDAITVTLEVAGHTFVLKENVTTVLGFKSIRQGESITEMQQPFSEGDEVKISKTNIREHETTPPEYFNEGSLLKAMENPQNFIQLKDKKYAQTLKQTGGIGTVATRADIIDKLFNMNAIESRDGKIKVTSKGKQILELAPEELTSPLLTAQWEEKLLLIERGKYQAKTFINEMKDFTKDVVNGIKNSDRKYKHDNLTTTECPTCGKFMIKVKTKNGQMLVCQDPSCKTKKNVQRKTNARCPNCKKKLTLFGKGKEAVYRCVCGHSETQAHMDQRMKSKSSGKVSRKEMKKYMNKNEGLDNNPFKDALKNLNL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



NACID_B_1(1I7D)
TOP3_ECOLI
[Raw transfer]
-
NACID_C_1(2O59)
TOP3_ECOLI
[Raw transfer]
-
21 HHSearch 91.1029% -66 - C3 -1I7D - TOP3_ECOLI -
5 PsiBlast_PDB 90.5929% -69 - C3 -2O5C - TOP3_ECOLI -
1 PsiBlast_PDB 90.2629% -68 - C3 -1D6M - TOP3_ECOLI -
3 PsiBlast_PDB 90.1529% -72 - C3 -2O54 - TOP3_ECOLI -
2 PsiBlast_PDB 89.6429% -72 - C3 -2O19 - TOP3_ECOLI -
4 PsiBlast_PDB 89.4029% -74 - C3 -2O59 14.0 TOP3_ECOLI
6 PsiBlast_PDB 89.3929% -70 - C3 -2O5E - TOP3_ECOLI -
7 PsiBlast_PDB 89.1029% -69 - C3 -1I7D 18.2 TOP3_ECOLI
8 PsiBlast_PDB 80.6627% -51 - C3 -2GAI - TOP1_THEMA -
9 PsiBlast_PDB 80.5227% -54 - C3 -2GAJ - TOP1_THEMA -
23 HHSearch 79.4526% -62 * C3 *1MW9 - TOP1_ECOLI -
22 HHSearch 79.2828% -54 - C3 -2GAI - TOP1_THEMA -
46 Fugue 77.0327% -39 - C3 -2GAI - TOP1_THEMA -
51 Fugue 75.5223% -23 - C3 -4CGY - TOP3A_HUMAN -
12 PsiBlast_PDB 71.3326% -57 - C3 -1CY6 4.1 TOP1_ECOLI
18 PsiBlast_PDB 71.1326% -50 - C3 -1MW8 - TOP1_ECOLI -
19 PsiBlast_PDB 70.7826% -51 - C3 -1MW9 - TOP1_ECOLI -
10 PsiBlast_PDB 70.6626% -53 - C3 -1CY1 - TOP1_ECOLI -
17 PsiBlast_PDB 70.4826% -54 - C3 -3PWT - TOP1_ECOLI -
15 PsiBlast_PDB 70.4726% -56 - C3 -1CY4 - TOP1_ECOLI -