@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0108: (2015-12-12 )
MKHLIIVESPAKAKTIKNFLDKNYEVVASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILNVLKTPRKIDMFKVNAQQARRLLDRIVGFKLSSLIASKITKGLSAGRVQSAALKLVIDREKEIRPFKPLTYFTLDALFEPHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYIISSIIKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARAKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDALFESQSVVVACEKGEFKASGRKLLFDGHYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEILEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYIKQTENANDEAKQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNAKETIEGVKCPECGGDIALKRSKKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAHECIQCKERVFLEEDNG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
23 HHSearch 82.1542% -70 - C4 -1MW9 - TOP1_ECOLI -
48 Fugue 81.6441% -53 - C4 -2GAI - TOP1_THEMA -
21 HHSearch 81.6442% -68 - C4 -2GAI - TOP1_THEMA -
13 PsiBlast_PDB 81.4241% -71 - C4 -2GAJ - TOP1_THEMA -
12 PsiBlast_PDB 81.2941% -70 - C4 -2GAI - TOP1_THEMA -
55 Fugue 81.2531% -47 - C4 -4DDU - RGYR_THEMA -
9 PsiBlast_PDB 80.8140% -67 - C4 -1MW8 9.1 TOP1_ECOLI
10 PsiBlast_PDB 80.7440% -67 - C4 -1MW9 - TOP1_ECOLI -
11 PsiBlast_PDB 80.5040% -76 - C4 -3PX7 12.0 TOP1_ECOLI
1 PsiBlast_PDB 80.3940% -67 - C4 -1ECL - TOP1_ECOLI -
5 PsiBlast_PDB 80.3240% -67 - C4 -1CY8 4.1 TOP1_ECOLI
8 PsiBlast_PDB 80.0440% -65 - C4 -3PWT - TOP1_ECOLI -
6 PsiBlast_PDB 79.8740% -69 - C4 -1CY0 - TOP1_ECOLI -
4 PsiBlast_PDB 79.6240% -70 - C4 -1CY6 3.8 TOP1_ECOLI
7 PsiBlast_PDB 79.5840% -73 - C4 -1CY4 3.7 TOP1_ECOLI
3 PsiBlast_PDB 79.4040% -68 - C4 -1CY2 4.1 TOP1_ECOLI
2 PsiBlast_PDB 79.3940% -69 - C4 -1CY1 4.1 TOP1_ECOLI
50 Fugue 73.6628% -49 - C4 -1GKU - RGYR_ARCFU -
16 PsiBlast_PDB 68.8728% -53 - C4 -4DDT - RGYR_THEMA -
19 PsiBlast_PDB 68.6628% -54 - C4 -4DDW - RGYR_THEMA -