@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0505: (2015-12-15 )
MRRIVVTGMGMINSLGLNKEDSFLAIAKGECGIKNIESFDANAFPVRIAGEITDFDPTEVMNPKDVKKAGRFIQLALKATREAMKDSGILDAHNRCPEELANRMGVSSGSGIGGLGNIEANSIFCFEKGPRKVNPFFITSALVNMIGGFTSIEFGIKGPNLSSVTACAAGTHAIIEAVKTILLNGADRMLVVGAESTICPVGIGGFASIKALSTRNDDPKKASRPFDKDRNGFVMGEGAGALVLEEYESAKKRGAKIYAEFAGYGESGDANHITAPAPEGEGAFRAMKMALEMAKVEVGYVNAHGTSTHYNDWYESIALKNVFGSKEKVPPVSSTKGQIGHCLGAAGALEAVISIMAMNQGILPPTINQETPDPECDLDYIPNTAREKQVNAVMSNSFGFGGTNGVVIFKKA

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMN_A_2(3HNZ)
FABF_ECOLI
[Raw transfer]




1X9_A_6(4LS7)
FABF_BACSU
[Raw transfer]




840_A_2(3I8P)
FABF_ECOLI
[Raw transfer]




PMN_C_3(2GFX)
FABF_ECOLI
[Raw transfer]




N3A_A_2(3HO9)
FABF_ECOLI
[Raw transfer]




1X9_B_10(4LS7)
FABF_BACSU
[Raw transfer]




1XG_B_10(4LS8)
FABF_BACSU
[Raw transfer]




1XG_A_3(4LS8)
FABF_BACSU
[Raw transfer]




P9C_A_2(3G11)
FABF_ECOLI
[Raw transfer]




CER_A_3(1B3N)
FABF_ECOLI
[Raw transfer]




P9A_A_2(3G0Y)
FABF_ECOLI
[Raw transfer]




N32_A_2(3HO2)
FABF_ECOLI
[Raw transfer]




GOL_B_10(4LS5)
FABF_BACSU
[Raw transfer]




GOL_B_9(4LS6)
FABF_BACSU
[Raw transfer]




6NA_A_3(2IWZ)
OXSM_HUMAN
[Raw transfer]




6NA_A_3(2IWZ)
OXSM_HUMAN
[Raw transfer]




6NA_B_5(2IWZ)
OXSM_HUMAN
[Raw transfer]




6NA_A_3(2IX4)
KASM_ARATH
[Raw transfer]




6NA_B_5(2IX4)
KASM_ARATH
[Raw transfer]




6NA_A_3(2IX4)
KASM_ARATH
[Raw transfer]




DAO_C_3(2GFY)
FABF_ECOLI
[Raw transfer]




EDO_A_4(4JGA)
?
[Raw transfer]




EDO_A_4(4JGA)
?
[Raw transfer]




EDO_A_4(3KZU)
?
[Raw transfer]




3MQ_A_5(3MQD)
?
[Raw transfer]




EDO_A_5(3KZU)
?
[Raw transfer]




EDO_A_5(3KZU)
?
[Raw transfer]




27 PsiBlast_CBE 97.8049% -66 - C4 -4JRM - FABF_VIBCH -
34 PsiBlast_CBE 97.3848% -66 - C4 -3G11 6.9 FABF_ECOLI
9 PsiBlast_PDB 97.3549% -65 - C4 -4JRM - FABF_VIBCH -
22 PsiBlast_CBE 97.1249% -65 - C4 -4LS8 3.5 FABF_BACSU
4 PsiBlast_PDB 97.1249% -66 - C4 -4LS8 3.8 FABF_BACSU
16 PsiBlast_PDB 96.9549% -65 - C4 -2GFW - FABF_ECOLI -
29 PsiBlast_CBE 96.9349% -65 - C4 -4JRH - FABF_VIBCH -
5 PsiBlast_PDB 96.7249% -64 - C4 -4LS6 - FABF_BACSU -
25 PsiBlast_CBE 96.7149% -64 - C4 -4LS6 2.6 FABF_BACSU
28 PsiBlast_CBE 96.6249% -66 - C4 -4JRM - FABF_VIBCH -
2 PsiBlast_PDB 96.6249% -65 - C4 -4LS5 - FABF_BACSU -
15 PsiBlast_PDB 96.4949% -65 - C4 -1KAS - FABF_ECOLI -
20 PsiBlast_PDB 96.3748% -65 - C4 -3HO2 6.5 FABF_ECOLI
24 PsiBlast_CBE 96.2749% -65 - C4 -4LS5 2.8 FABF_BACSU
32 PsiBlast_CBE 96.2448% -64 - C4 -3I8P 6.3 FABF_ECOLI
35 PsiBlast_CBE 96.2348% -65 - C4 -3G0Y 6.6 FABF_ECOLI
3 PsiBlast_PDB 96.2149% -65 - C4 -4LS7 4.6 FABF_BACSU
21 PsiBlast_CBE 96.2049% -64 - C4 -1J3N - ? -
116 HHSearch 96.0046% -67 - C4 -3KZU 3.0 ?
19 PsiBlast_PDB 95.9048% -61 - C4 -3HNZ 7.1 FABF_ECOLI
17 PsiBlast_PDB 95.8548% -63 - C4 -2GFY 3.1 FABF_ECOLI
33 PsiBlast_CBE 95.8348% -65 - C4 -3HO9 6.3 FABF_ECOLI
23 PsiBlast_CBE 95.7649% -63 - C4 -4LS7 5.0 FABF_BACSU
14 PsiBlast_PDB 95.7149% -66 - C4 -1B3N 3.3 FABF_ECOLI
36 PsiBlast_CBE 95.4948% -63 - C4 -2GFX 6.4 FABF_ECOLI
44 PsiBlast_CBE 95.4343% -62 - C4 -3KZU 3.0 ?
45 PsiBlast_CBE 94.8043% -63 - C4 -3KZU 3.0 ?
37 PsiBlast_CBE 94.4644% -66 - C4 -4JGA 3.0 ?
38 PsiBlast_CBE 94.2644% -67 - C4 -4JGA 3.0 ?
128 HHSearch 93.5346% -63 - C4 -2IX4 1.9 KASM_ARATH
119 HHSearch 92.8043% -62 - C4 -2IWZ 3.8 OXSM_HUMAN
54 PsiBlast_CBE 92.6542% -58 - C4 -2IWZ 3.8 OXSM_HUMAN
40 PsiBlast_CBE 92.4242% -64 - C4 -2IX4 2.9 KASM_ARATH
39 PsiBlast_CBE 92.3842% -67 - C4 -2IX4 3.4 KASM_ARATH
53 PsiBlast_CBE 91.4542% -56 - C4 -2IWZ 2.7 OXSM_HUMAN
112 HHSearch 88.8036% -59 - C4 -3MQD 1.9 ?