@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0558: (2015-12-16 )
MIKSQKEYLERIEYLNTLSHHYYNLDEPIVSDAVYDELYQELKAYEEENPNRIQANSPTQKVGATATNEFSKNPHLMRMWSLDDVFNQNELRAWLQRILKVYPNASFVCSPKLDGVSLNLLYQHGKLISATTRGNGLEGELVTNNAKHIANIPHSIAYNGEIEIRGEVIISKEDFDALNKERLNANEPLFANPRNAASGSLRQLDSNITKKRKLQFIPWGVGKHSLHFLRFKECLDFIVSLGFSAIQYLSLNKNHQEIEENYHTLIREREGFFALLDGMVIVVDELDIQKELGYTQKSPKFACAYKFPALEKHTKIVGVINQVGRSGAITPVALLEPVEIAGAMVNRATLHNYSEIEKKNIMLNDRVVVIRSGDVIPKIIKPLESYRDGSQQKIMRPKVCPICSHELLCEEIFTYCQNLNCPARLKESLIHFASKDALNIQGLGDKVIEQLFEEKLIFNALDLYALKLEDLMRLDKFKIKKAQNLLDAIQKSKNPPLWRLINALGIEHIGKGASKTLAKYGLNVLEKSEAEFLEMEGFGVEMAHSLVNFYASNQEFIRSLFELLNPKSSDTAEEKQKSSSVFSDKTIVLTGTLSKPRQEYAQMLENLGAKIASSVSAKTDFLIAGENAGSKLALAQKHGVSVLNEEELLKRLKELD

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMP_D_10(2OWO)
DNLJ_ECOLI
[Raw transfer]



IVH_A_2(3PN1)
DNLJ_HAEIN
[Raw transfer]



AMP_B_2(1ZAU)
DNLJ_MYCTU
[Raw transfer]



AMP_B_2(1ZAU)
DNLJ_MYCTU
[Raw transfer]



0OW_A_5(4EFB)
DNLJ_ENTFA
[Raw transfer]



3BD_A_7(3BAB)
DNLJ_ENTFA
[Raw transfer]



AMP_A_3(3UQ8)
DNLJ_HAEIN
[Raw transfer]



GOL_A_8(3BA9)
DNLJ_ENTFA
[Raw transfer]



AMP_A_3(3UQ8)
DNLJ_HAEIN
[Raw transfer]



GOL_A_9(3BAA)
DNLJ_ENTFA
[Raw transfer]



AMP_A_2(3SGI)
DNLJ_MYCTU
[Raw transfer]



AMP_A_2(3SGI)
DNLJ_MYCTU
[Raw transfer]



3B9_A_5(3BAC)
DNLJ_HAEIN
[Raw transfer]



NACID_C_2(4GLX)
DNLJ_ECOLI
[Raw transfer]
-
NACID_C_2(2OWO)
DNLJ_ECOLI
[Raw transfer]
-
NACID_C_2(2OWO)
DNLJ_ECOLI
[Raw transfer]
-
1 PsiBlast_PDB 86.1238% -78 - C3 -2OWO 5.3 DNLJ_ECOLI
2 PsiBlast_PDB 85.5939% -71 - C3 -1DGS - DNLJ_THEFI -
21 PsiBlast_CBE 85.5039% -68 - C3 -1DGS - DNLJ_THEFI -
3 PsiBlast_PDB 85.3837% -85 - C3 -4GLX 6.4 DNLJ_ECOLI
30 HHSearch 85.3738% -80 - C3 -2OWO 5.3 DNLJ_ECOLI
51 Fugue 84.5236% -73 - C3 -1DGS - DNLJ_THEFI -
5 PsiBlast_PDB 79.2139% -76 - C3 -1V9P - DNLJ_THEFI -
22 PsiBlast_CBE 77.6139% -70 - C3 -1V9P - DNLJ_THEFI -
34 HHSearch 64.5540% -56 - C3 -3JSL - DNLJ_STAAU -
31 HHSearch 63.5736% -46 - C3 -3SGI 4.6 DNLJ_MYCTU
9 PsiBlast_PDB 63.4438% -58 - C3 -3UQ8 6.0 DNLJ_HAEIN
10 PsiBlast_PDB 63.3238% -59 - C3 -3PN1 5.9 DNLJ_HAEIN
4 PsiBlast_PDB 62.9937% -54 - C3 -3SGI 4.1 DNLJ_MYCTU
6 PsiBlast_PDB 62.7041% -58 - C3 -3JSL - DNLJ_STAAU -
32 HHSearch 62.6438% -55 - C3 -3UQ8 6.0 DNLJ_HAEIN
23 PsiBlast_CBE 62.5641% -58 - C3 -3JSL - DNLJ_STAAU -
8 PsiBlast_PDB 62.3041% -57 - C3 -4CC6 - DNLJ_STAAU -
7 PsiBlast_PDB 61.9841% -58 - C3 -4CC5 - DNLJ_STAAU -
33 HHSearch 60.6837% -57 - C3 -1B04 - DNLJ_GEOSE -
52 Fugue 60.6537% -57 * C3 *1B04 - DNLJ_GEOSE -
16 PsiBlast_PDB 59.4138% -67 - C3 -3BAB 6.2 DNLJ_ENTFA
14 PsiBlast_PDB 59.2638% -64 - C3 -3BA9 3.1 DNLJ_ENTFA
20 PsiBlast_PDB 59.1738% -65 - C3 -4EFB 6.1 DNLJ_ENTFA
15 PsiBlast_PDB 58.9238% -66 - C3 -3BAA 2.7 DNLJ_ENTFA
35 HHSearch 58.7536% -58 - C3 -1ZAU 4.4 DNLJ_MYCTU
28 PsiBlast_CBE 58.2837% -60 - C3 -1ZAU 4.4 DNLJ_MYCTU
29 PsiBlast_CBE 55.0039% -64 - C3 -3BAC 5.9 DNLJ_HAEIN