@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0560: (2015-12-16 )
MRSHFCTEISEKDVGKTIKVAGWCNTYRDHGGVVFIDLRDKSGLVQLVCDPSSKAYEKALEVRSEFVLVAKGKARLRGAGLENPKLKTGKIEIVLEELVIENKSATPPIEIGNKSVNEDLRLKYRYLDLRSLNAYEIFKLRSEVALITRNALAQKGFLEIETPILSKTTPEGARDYLVPSRVHEGEFFALPQSPQLFKQLLMVGGMDRYFQIARCFRDEDLRADRQPEFTQIDAEMSFCDEDDVMGVVEDLLQEIFKAIGHTISKPFKRMPYKEAMENYGSDKPDLRFELPLIEVGDCFMDSSNSIFSNIAQDPKDKRIKALNVKGADAVFSRSVLKELEEFVRQFGAKGLAYLQIKEDGIKGPLVKFLSEKGLKNILERTDAQVGDIVFFGAGDKKIVLDYMGRLRLKVAETLDLIDKDALNFLWVVHFPMFEKTENGYHAAHHPFTMPKNIECEDIEEIEAHAYDVVLNGVELGGGSIRIHKEEMQKKVFEKININEEEAQKKFGFLLEALKFGAPPHGGFAIGFDRLIMLMTKSNSIRDVIAFPKTQKASCLLTDAPSPINEEQLRELHIRLRKPI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_E_5(1G51)
SYD_THETH
[Raw transfer]



AMO_F_6(1G51)
SYD_THETH
[Raw transfer]



AMO_E_5(1C0A)
SYD_ECOLI
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



ASP_B_6(4O2D)
SYDND_MYCS2
[Raw transfer]



ASP_A_3(4O2D)
SYDND_MYCS2
[Raw transfer]



GOL_B_15(1E1O)
SYK2_ECOLI
[Raw transfer]



ASP_A_3(4WJ4)
SYDND_PSEAE
[Raw transfer]



3SY_A_2(4RMF)
SYDND_MYCS2
[Raw transfer]
1 PsiBlast_PDB 94.6551% -99 - C5 -4WJ3 - SYDND_PSEAE -
3 PsiBlast_PDB 94.2648% -98 - C5 -1C0A 8.5 SYD_ECOLI
23 PsiBlast_CBE 94.1248% -98 - C5 -1EQR - SYD_ECOLI -
4 PsiBlast_PDB 93.5448% -97 - C5 -1EQR - SYD_ECOLI -
5 PsiBlast_PDB 93.3848% -99 - C5 -1IL2 - SYD_ECOLI -
21 PsiBlast_CBE 92.4248% -97 - C5 -1IL2 - SYD_ECOLI -
72 Fugue 92.2648% -95 - C5 -1C0A 8.5 SYD_ECOLI
2 PsiBlast_PDB 92.2651% -93 - C5 -4WJ4 2.8 SYDND_PSEAE
22 PsiBlast_CBE 92.1448% -96 - C5 -1EQR - SYD_ECOLI -
52 HHSearch 91.7750% -98 * C5 *1L0W - SYD_THETH -
25 PsiBlast_CBE 90.0248% -94 - C5 -1G51 7.9 SYD_THETH
9 PsiBlast_PDB 89.9148% -94 - C5 -1G51 7.5 SYD_THETH
6 PsiBlast_PDB 89.9145% -87 - C5 -4O2D 3.6 SYDND_MYCS2
10 PsiBlast_PDB 89.8748% -97 - C5 -1L0W - SYD_THETH -
7 PsiBlast_PDB 89.2045% -86 - C5 -4RMF 3.3 SYDND_MYCS2
8 PsiBlast_PDB 88.7348% -95 - C5 -1EFW - SYD_THETH -
24 PsiBlast_CBE 84.9445% -80 - C5 -4O2D 3.8 SYDND_MYCS2
11 PsiBlast_PDB 79.9039% -83 - C5 -4AH6 - SYDM_HUMAN -
58 HHSearch 66.2127% -86 - C5 -3I7F - ? -
56 HHSearch 65.1732% -78 - C5 -3NEM 6.7 SYD_THEKO