Atome 2 Filter

@TOME V2.3
(Nov 2016)

Ref. - - Doc.

Global output mode :

Sort entries by :

Sequence Color type :

Show alignment :

Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling

Templates Information:

Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]

Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_1265: (2015-12-22 )
MPIKIAINGTGRIGLCAIRVASQRKDVEIVAINSTAELETLLHLIRHDSVHGHFEAKLNANRTLNIGHSKNILVLSERDINKLDFSVANAEIIIECTGKFNSLEASSAHLKNSVKKVIISAPAQNAPTFVYGVNHTNYHNESVISNASCTTNATAPLLKILDEAFKVENALLTTIHSYTNDQNLLDTKHKDIRRARAASLNLIPTSTGVSKAISLVLPHLGPKITGLAIRVPTPNVSLVDLSLNFKKVVSKASVQHALKDASKHAFKGIVSVDEERLVSSDFISSPFSAIVIDDQIMTIGEKNAKVLAWYDNEMGYSERLIDMAQYIAQN

Atome Classification :

(45 SA)

Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)

(Atome)

(Ident)

(Tito)

(Num)

(pKd)

(Uniprot)

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]

NAD_A_3(4BOY)
?
[Raw transfer]

NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]

NDP_B_14(1RM4)
G3PA_SPIOL
[Raw transfer]

NAD_B_4(4BOY)
?
[Raw transfer]

NAD_A_3(3ZCX)
?
[Raw transfer]

NAD_B_6(3ZDF)
?
[Raw transfer]

NAD_B_4(3ZCX)
?
[Raw transfer]

NAD_B_14(1NBO)
G3PA_SPIOL
[Raw transfer]

NAD_B_4(3L0D)
?
[Raw transfer]

NAD_A_3(3CPS)
?
[Raw transfer]

NAD_A_13(1NBO)
G3PA_SPIOL
[Raw transfer]

NAD_O_12(1NBO)
G3PA_SPIOL
[Raw transfer]

NDP_A_13(1RM4)
G3PA_SPIOL
[Raw transfer]

NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]

NDP_O_14(1RM5)
G3PA_SPIOL
[Raw transfer]

NDP_B_16(1RM5)
G3PA_SPIOL
[Raw transfer]

NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]

NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]

NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]

NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]

NAD_A_3(3L0D)
?
[Raw transfer]

NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]

NDP_A_15(1RM5)
G3PA_SPIOL
[Raw transfer]

CHAIN_D_4(3ZDF)
?
[Raw transfer]
-

CHAIN_C_3(3ZDF)
?
[Raw transfer]
-

71

PsiBlast_CBE

95.37

45%

- C4 -

-

?

-

68

PsiBlast_CBE

95.24

45%

- C4 -

-

?

-

118

HHSearch

94.71

48%

- C4 -

-

-

19

PsiBlast_PDB

94.63

45%

- C4 -

-

?

-

5

PsiBlast_PDB

94.42

47%

- C4 -

-

-

48

PsiBlast_CBE

94.35

47%

- C4 -

-

-

41

PsiBlast_CBE

94.33

47%

- C4 -

-

-

66

PsiBlast_CBE

94.23

45%

- C4 -

-

?

-

70

PsiBlast_CBE

94.13

45%

- C4 -

-

?

-

34

PsiBlast_CBE

94.05

47%

- C4 -

-

-

49

PsiBlast_CBE

94.04

47%

- C4 -

-

-

69

PsiBlast_CBE

94.02

45%

- C4 -

-

?

-

47

PsiBlast_CBE

93.90

47%

- C4 -

-

-

72

PsiBlast_CBE

93.89

45%

- C4 -

-

?

-

35

PsiBlast_CBE

93.88

47%

- C4 -

-

-

10

PsiBlast_PDB

93.88

47%

- C4 -

-

-

67

PsiBlast_CBE

93.86

45%

- C4 -

-

?

-

51

PsiBlast_CBE

93.81

47%

- C4 -

-

-

36

PsiBlast_CBE

93.79

47%

- C4 -

-

-

45

PsiBlast_CBE

93.75

47%

- C4 -

-

-

112

HHSearch

93.04

43%

- C4 -

12

PsiBlast_PDB

92.87

45%

- C4 -

?

15

PsiBlast_PDB

92.74

43%

- C4 -

62

PsiBlast_CBE

92.67

43%

- C4 -

65

PsiBlast_CBE

92.64

44%

- C4 -

?

54

PsiBlast_CBE

92.48

45%

- C4 -

?

63

PsiBlast_CBE

92.32

44%

- C4 -

?

18

PsiBlast_PDB

92.21

44%

- C4 -

?

64

PsiBlast_CBE

92.13

44%

- C4 -

?

16

PsiBlast_PDB

92.01

44%

- C4 -

?

17

PsiBlast_PDB

91.85

44%

- C4 -

?

116

HHSearch

91.41

44%

- C4 -

113

HHSearch

91.37

42%

- C4 -

?

115

HHSearch

91.16

40%

- C4 -

77

PsiBlast_CBE

90.71

43%

- C4 -

78

PsiBlast_CBE

90.63

43%

- C4 -

108

HHSearch

90.46

44%

- C4 -

94

PsiBlast_CBE

90.42

43%

- C4 -

79

PsiBlast_CBE

90.37

43%

- C4 -

95

PsiBlast_CBE

90.36

43%

- C4 -

80

PsiBlast_CBE

90.30

43%

- C4 -

81

PsiBlast_CBE

90.17

43%

- C4 -

96

PsiBlast_CBE

90.06

43%

- C4 -

20

PsiBlast_PDB

89.93

43%

- C4 -

119

HHSearch

87.71

36%

- C4 -