@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0014: (2016-03-11 )
MKWNEFIVTGDPMILGAQISIVLVSIGVVALLTYTKKWKWLMKEWISSVDHKKIGIMYLLAAVLMFFRGGVDALMMRTQLALPDMKFLDAQHYNEVFSTHGTIMILFMAMPFIIGLMNIAVPLQIGARDVAFPFLNNLSFWTFFMGAMLFNLSFVIGGSPDAGWTNYAPLATDFSAGYGINFYLLGVQIAGIGTLMTGINFFVTILRMRTKGMTLMKMPMFTWSSLITSLIIIFAFPVLTVALALMSFDRLFGTAFFTLTNGGLPMMWANLFWVWGHPEVYIVILPAFGIFSEIISTFSRKKLFGYPAMVAAMAVISLLSFLVWVHHFFTMGSGALVNSFFSITTMMIAIPTGIKIFNWLFTMYKGRITFTTPMLWSLAFIPNFVVGGVTGVMLAMAAADYQYHNTYFLVSHFHYVLIAGTVFSCFAGLTYWYPKMVGYRLNEKIGKWFFWIFVVGFNVCFFPQYFLGLDGMPRRIYTYVQGDGWTTLNFISTVGGFLMGVAFLVLCYNIYYSYKNSKREVTGDPWDARTLEWATSSAVPPKYNFAVLPEWNDLDDFWNRKQKGDPYVNDKNYKPIHMPSNTMVGFVMSVFFFIAGFGLVFYWYWMGIIGLVGILGCMIYRSFQNNDGYHVEVEEIKATEEHNARELATGVKEGNPWNL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEA_A_11(1AR1)
COX1B_PARDE
[Raw transfer]




HEA_A_11(1AR1)
COX1B_PARDE
[Raw transfer]




HEA_A_6(3HB3)
COX1B_PARDE
[Raw transfer]




22 PsiBlast_CBE 90.4540%-135 - C4 -2YEV - COX13_THET8 -
2 PsiBlast_PDB 90.3340%-135 - C4 -2YEV - COX13_THET8 -
34 HHSearch 87.1339%-142 - C4 -2YEV - COX13_THET8 -
21 PsiBlast_CBE 85.4251%-141 - C4 -1FFT - CYOB_ECOLI -
1 PsiBlast_PDB 85.3551%-141 - C4 -1FFT - CYOB_ECOLI -
33 HHSearch 84.9852%-142 - C4 -1FFT - CYOB_ECOLI -
36 HHSearch 83.2242%-145 - C4 -2GSM - COX1_RHOSH -
12 PsiBlast_PDB 83.1339%-140 - C4 -1M57 - COX1_RHOSH -
15 PsiBlast_PDB 82.6440%-145 - C4 -3OM3 - ? -
13 PsiBlast_PDB 82.6340%-148 - C4 -3OMI - ? -
9 PsiBlast_PDB 82.6039%-147 - C4 -3DTU - COX1_RHOSH -
14 PsiBlast_PDB 82.5740%-146 - C4 -3OMN - ? -
27 PsiBlast_CBE 82.5239%-142 - C4 -1M56 - COX1_RHOSH -
7 PsiBlast_PDB 82.5139%-141 - C4 -1M56 - COX1_RHOSH -
32 PsiBlast_CBE 82.4640%-142 - C4 -3OM3 - ? -
25 PsiBlast_CBE 82.3839%-147 - C4 -3DTU - COX1_RHOSH -
16 PsiBlast_PDB 82.3640%-146 - C4 -3OMA - ? -
5 PsiBlast_PDB 82.3141%-139 - C4 -1QLE - COX1B_PARDE -
31 PsiBlast_CBE 82.2640%-146 - C4 -3OMA - ? -
49 Fugue 82.0342%-146 * C4 *1AR1 13.1 COX1B_PARDE
4 PsiBlast_PDB 81.5340%-144 - C4 -3HB3 12.8 COX1B_PARDE
3 PsiBlast_PDB 81.4940%-143 - C4 -1AR1 13.1 COX1B_PARDE