@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1320: (2016-03-23 )
MTAKEEEKQERFQLLMTQIGLQDVTTYEEFTKDAKIEKLVADKKNKTWQFHLHVPQIFPAALFHMMDVGMKRAFSQIAETEMQIVPENQTINETLIQDYWNLIVEPIGKQSPMIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAGFPRLAMKMHMLDQSETDEYKAFAQAKQEEDQKKAAEAVQVMQKRQAEGQSGGGGAAPLTGPFQIGYKIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELRSGRSLLQFKITDYTSSMIIKMFSRDNEDAAMFQNLKKGMWVKVRGSVQNDTFVRDLIMMAQDVNEIAGVKRLDTAEEKRAELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAGQKYGLKVIFGIEANLIDDGVPIAYNDQHIALEDATYCVFDVETTGLSAVYDTIIELAGVKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDDMVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIYAQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQKGMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVATGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKEIVVTNANLVVDWMENLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEARLEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSFVATMTEITEVNPLPPHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTAYQKEGQDIPFETFLGFKGDKVPDIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMNMTIRGAEIDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFHSIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLGVKPADIDSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIKNKTCELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTDEMEEAMMANKVPLWYIESCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEAVKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGESLIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLPDQNQLSLF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DGT_A_11(3F2B)
?
[Raw transfer]



NACID_T_3(3F2B)
?
[Raw transfer]
-
NACID_P_2(3F2B)
?
[Raw transfer]
-
NACID_T_3(3F2B)
?
[Raw transfer]
-
42 Fugue 98.2972% -90 - C1 -3F2B Error ?
1 PsiBlast_PDB 89.2573% -91 - C1 -3F2B 10.2 ?
23 HHSearch 68.2825% -74 - C1 -2HNH - DPO3A_ECOLI -
22 HHSearch 66.1025% -77 - C1 -2HPI - DPO3A_THEAQ -
44 Fugue 63.3622% -61 * C1 *2HNH - DPO3A_ECOLI -
3 PsiBlast_PDB 54.8022% -69 - C1 -3E0D - DPO3A_THEAQ -
6 PsiBlast_PDB 54.6722% -70 - C1 -4IQJ - DPO3A_THEAQ -
5 PsiBlast_PDB 54.5322% -69 - C1 -2HPM - DPO3A_THEAQ -
4 PsiBlast_PDB 54.4922% -71 - C1 -2HPI - DPO3A_THEAQ -
2 PsiBlast_PDB 50.9623% -52 - C1 -2HNH - DPO3A_ECOLI -
7 PsiBlast_PDB 50.8323% -53 - C1 -2HQA - DPO3A_ECOLI -
12 PsiBlast_PDB 37.4228% -38 - C2 -2GUI - DPO3E_ECOLI -
14 PsiBlast_PDB 37.2328% -35 - C2 -1J54 - DPO3E_ECOLI -
26 HHSearch 36.6425% -38 - C2 -2GUI - DPO3E_ECOLI -
13 PsiBlast_PDB 36.3728% -33 - C2 -1J53 - DPO3E_ECOLI -
28 HHSearch 36.1527% -25 - C2 -2F96 - RNT_PSEAE -
46 Fugue 36.0526% -37 * C2 *1J54 - DPO3E_ECOLI -
27 HHSearch 35.7426% -32 - C2 -3V9W - RNT_ECOLI -
37 HHSearch 34.9320% -5 - C2 -2QXF - EX1_ECOLI -
11 PsiBlast_PDB 33.7730% 5 - C2 -4FZX - EXOX_ECOLI -